New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3877664	NA (NA)	3 (0.080)	3/270	5.9	NA	noncoding (80/98 nt)	RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site	RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 3877675	NA (NA)					noncoding (91/98 nt)	RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site	RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

AGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGGCAGCAATCGCAT  >  NC_000913/3877536‑3877813                                                                                                                                            |                                                                                                                                           aGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATTAGCGTAGCGCATc                                                                                                                                         >  2:23138/1‑143 (MQ=255)   aaaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGTCCTGATAAGCGTAGCGCATCAg                                                                                                                                       >  1:601730/1‑143 (MQ=255)      gaaaaaGGGCGGAGACGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCa                                                                                                                                    <  2:228677/142‑1 (MQ=255)         aaaGGGCGGAGATCATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAATCATGAAAATTAAATACATTTCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGc                                                                                                                                 >  2:665762/1‑143 (MQ=255)                          tcCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCa                                                                                                                >  2:627814/1‑143 (MQ=255)                             gCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCATTATCCGGCCTACAAAATCATGAAACTTCAATACATTGCAAGCTTTTCGTAGGCCTGATAAGCGGACGGCCTCAGGCACGCGCGAACAGATGGCGCCAttc                                                                                                             >  1:14458/1‑142 (MQ=18)                                  tttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAGTTCAGTACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTACCGCCATTAAagat                                                                                                        >  1:462085/1‑143 (MQ=255)                                  tttCTTAGAGCGTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAatat                                                                                                        <  2:92167/143‑1 (MQ=255)                                    tCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACCTTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCg                                                                                                      <  2:74556/143‑1 (MQ=255)                                      ttATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCAACTAGTGACCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGat                                                                                                    <  2:521694/143‑1 (MQ=25)                                      ttATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAACATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTACATATCGag                                                                                                    >  2:54037/1‑142 (MQ=255)                                       tataGCTTCTCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGata                                                                                                   <  1:551019/143‑1 (MQ=255)                                        ataGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCGTGATAACCGTAGCCCGTCAGCCTCGCTCGCTTGGTTAGCTGCATTAAATATCTatat                                                                                                  >  2:365640/1‑143 (MQ=21)                                        ataGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCCCGCTCGCATGGTTAGCGCCATTAAATATCGatat                                                                                                  >  1:12109/1‑143 (MQ=255)                                            cttcttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCCCATCAGGCACGCCCGCACGGTTAGCGCCATTAGATATCGATACTcgc                                                                                              >  2:667354/1‑143 (MQ=21)                                                   ccGGATGCGGCGTGAACGCCTTATCCGGCCTACAACATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGCTAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAACGCCATTAACTAGCGATAGTCGCCGCTTTc                                                                                       >  1:31671/1‑143 (MQ=21)                                                     ggATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAg                                                                                     <  1:456936/143‑1 (MQ=255)                                                     ggATGAGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAg                                                                                     <  2:221470/143‑1 (MQ=255)                                                        tGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGc                                                                                  <  2:599338/143‑1 (MQ=255)                                                            gcgTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTtc                                                                              >  2:674105/1‑143 (MQ=255)                                                                 aaCGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTctctgc                                                                         >  2:220363/1‑141 (MQ=255)                                                                   cGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCAGCTTTAAGGGCGTGCTCTTCaa                                                                       >  2:658841/1‑143 (MQ=255)                                                                    gCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAAt                                                                      <  1:397169/143‑1 (MQ=255)                                                                       ttATCCGGCCTACAAAATCATGCAAATTCAAGACATTGCAAGATTTTCGTAGGCCTGAGAAGCGTAGCGCATCAGTCACTCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATaaa                                                                   <  1:342712/143‑1 (MQ=255)                                                                        tATCCGGCCTACAAAATCATGAAAATTCAATACTTTGCAATATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAAc                                                                  <  2:211616/143‑1 (MQ=255)                                                                           ccGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCa                                                               <  2:167987/143‑1 (MQ=255)                                                                              gCCTATAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACgg                                                            <  1:30091/143‑1 (MQ=255)                                                                                  aCAAAATCATGAAACTTCAATACATTGCAAGATTTCCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGcgcg                                                        <  1:633565/143‑1 (MQ=255)                                                                                   cAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCgg                                                       >  1:236704/1‑143 (MQ=255)                                                                                    aaaaTCATGATAGTTCATTGCATTTCAAGATTTTCGTAGGCGTGATAAGCGTAGCGCATCTGGTACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAATCGCACGGCGCGGt                                                      <  1:556955/143‑1 (MQ=255)                                                                                                       aCATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCa                                                                        >  1:68517/1‑106 (MQ=255)                                                                                                       aCATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCa                                                                        <  2:68517/106‑1 (MQ=255)                                                                                                           tGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGCTATTCGCCGCTTTCAGGGCGCTCTCTTCCATAAACGCACGGCGCGGTTCCACGGCGTCGCCCATCAGCgt                               >  1:403812/1‑143 (MQ=255)                                                                                                              aaGGTTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCGCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCgtggt                            <  1:692694/143‑1 (MQ=255)                                                                                                                  ttttCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGaac                        <  1:23138/143‑1 (MQ=255)                                                                                                                             cTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCAATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAGCAACTGGTCGgc             >  1:483789/1‑143 (MQ=255)                                                                                                                             cTGATAAGCGTAGCGAATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTAAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGGGAACAACTGggcggc             >  2:240791/1‑143 (MQ=255)                                                                                                                              tGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGgca            <  1:365640/143‑1 (MQ=255)                                                                                                                              tGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGgca            <  2:64426/143‑1 (MQ=255)                                                                                                                                   aGCGTAGCGCATCAAGCCCGCTCGCATGGTGAGCGCCATTAAATATCGATATTCGCCGCTTTCAGCGCGCGCTCGTCAATAACCGCACGTCGCGTTTCAACGGCGTAGCCCTGCAGCGCGGCGAACCACGGCCCGgccgcagg       >  1:88936/1‑141 (MQ=255)                                                                                                                                      gTAGCGCATCGGGCACCCTCGCATGGTTAGCGCCATGAAATATCGATATGCGCCGCGTTCAGGGCGTTCTCTGCAATAAGCGCACGGCGTGGTTCAACGGCGTCGCTGATCAGTTTGGTGAACAACTGGTCGGCAGCAATCGc    <  1:220440/143‑1 (MQ=255)                                                                                                                                      gTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGGCAGCAATCGc    <  2:236704/143‑1 (MQ=255)                                                                                                                                      gTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGGCAGCAATCGc    <  1:627814/143‑1 (MQ=255)                                                                                                                                        aGCGCATCAGGCACGGTCGCATGGGTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCAGCAGCAATCGCAt  <  1:422655/143‑1 (MQ=255)                                                                                                                                            |                                                                                                                                           AGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAACGGCGTCGCCCATCAGCGTGGTGAACAACTGGTCGGCAGCAATCGCAT  >  NC_000913/3877536‑3877813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.