| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 2,023,805 | (CTTTA)2→1 | intergenic (+127/‑159) | fliR → / → rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2023801 = | 1 (0.020) | 55 (1.270) | 46/266 | 0.0 | 98.3% | intergenic (+123/‑167) | fliR/rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis |
| ? | NC_000913 | = 2023795 | 1 (0.020) | intergenic (+117/‑173) | fliR/rcsA | flagellar export pore protein/transcriptional regulator of colanic acid capsular biosynthesis | |||||
TTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGA > NC_000913/2023656‑2023936 | ttaGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAttt < 1:379038‑M2/143‑4 (MQ=255) aGTTAATTGTCATTAAGATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttac > 2:537794‑M2/1‑138 (MQ=255) gAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttacttt > 2:574199‑M2/1‑135 (MQ=255) aTTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaa > 2:598978‑M2/1‑133 (MQ=255) tGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGTGTTATCCGAAAAATAATACCTACGAACATCTTCCAGGCTACTCCTGCAGAGAAATCATTTGTTC‑AAGCTCACTCACATATCGCAACAtttactttaaga > 2:786898‑M2/1‑131 (MQ=255) aTTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaat < 1:70853‑M2/143‑17 (MQ=255) aTTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAatgactttcagcaaat < 2:20548‑M2/143‑17 (MQ=255) aTTAATATAATTCCGTAACGTTTACCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagaaaat < 2:385256‑M2/143‑17 (MQ=255) aaTATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattcc > 1:25683‑M2/1‑124 (MQ=255) atctAAGTCCGTAACGTTTATCATGTTATCCGAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattcca > 2:149573‑M2/1‑123 (MQ=255) taATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACCtttactttaagacaattccaggc < 1:260621‑M2/143‑24 (MQ=255) aaTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCTCAACAtttactttaagacaattccaggca < 2:662714‑M2/143‑25 (MQ=255) cGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaatta > 1:323581‑M2/1‑114 (MQ=255) tAACGTTTAGCATGTTATCCTAAGGCTTAGCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattata > 2:466781‑M2/1‑112 (MQ=255) aatctttatcaTGTTATCCTAAGGATTATCCGAAAAATAATACCCACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAATAtttactttaagacaattccaggcaaattatac > 1:44814‑M2/5‑111 (MQ=255) cGTTTATCATGTTATCCTAAGGATTATCCGAAAAATTATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaa > 1:57687‑M2/1‑109 (MQ=255) gTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaac < 2:655608‑M2/143‑36 (MQ=255) aTCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactt < 2:604958‑M2/143‑40 (MQ=255) aTTTTATCTTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttac > 1:292440‑M2/1‑101 (MQ=255) aTGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTATTAGGCTCCCTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttac > 1:548280‑M2/1‑101 (MQ=255) ggctaccCTCAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacg > 1:569060‑M2/4‑100 (MQ=255) gTTATCCGAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgg > 2:145634‑M2/1‑99 (MQ=255) ttATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacggg < 2:304409‑M2/143‑46 (MQ=255) cTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagt < 1:604709‑M2/143‑51 (MQ=255) cTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagt > 2:672049‑M2/1‑93 (MQ=255) cTAAGGATGACCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagt > 1:344657‑M2/1‑93 (MQ=255) aaGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaa > 1:363168‑M2/1‑91 (MQ=255) tATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgc > 1:656398‑M2/1‑85 (MQ=255) cGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatccaacactttacgggatagtaagtccgcctga < 2:761365‑M2/143‑63 (MQ=255) gAAAAATAATACCTACGAACATCTTCCAGGGTACGCCTGCAGCGGAGT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccggctgaa < 1:375126‑M2/143‑64 (MQ=255) gAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggccacttatccaaccctttccgcgttagtaactccgcctgaa < 1:198275‑M2/143‑64 (MQ=255) aaaTAATACCTACGAACCTCCTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaa > 1:750482‑M2/1‑77 (MQ=255) atactaCCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatc > 1:269069‑M2/1‑75 (MQ=255) aataCCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgc > 1:684392‑M2/1‑73 (MQ=255) aataCCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgc > 1:671522‑M2/1‑73 (MQ=255) aataCCTACGAACATCTTCCAGGATACCCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgc > 1:330636‑M2/1‑73 (MQ=255) taCCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcga > 2:213105‑M2/1‑71 (MQ=255) aCGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtg > 1:391385‑M2/1‑66 (MQ=255) gtCCAGGCTACTCGTGCAGCGAAAT‑ATTTGTTTTACGGTCCCTCACCTATCGTAACCT‑‑‑‑TTTCCTTAAGGAC‑ATTCCAGGGCAATTAAAACAAC‑CTTTGCGGGAAAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAg < 2:591350/142‑1 (MQ=255) aGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtga < 1:126758‑M2/143‑91 (MQ=255) aGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtga < 1:407023‑M2/143‑91 (MQ=255) aTACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCTCAACTtttattttaagacaattccaggcaaatgatacaacacgtgacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgaccc > 1:137993‑M2/1‑50 (MQ=255) tACTCCTGCAGCGCAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgaccca > 2:305886‑M2/1‑49 (MQ=255) tCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgt > 2:68928‑M2/1‑46 (MQ=255) cTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatagcgagaggtgcgcattaggtgacccatgttg < 1:716093‑M2/143‑100 (MQ=255) tGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgt > 1:456199‑M2/1‑43 (MQ=255) cAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattataaaacactttacgggatagtaagtccacctgaaaaatggcaagagtggcgcattaggtgactgaggtcgttc < 2:601558‑M2/143‑103 (MQ=255) gTTTTAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatga > 1:385256‑M2/1‑28 (MQ=255) ttttAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgat < 1:637087‑M2/143‑117 (MQ=255) tAAGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaa > 2:773626‑M2/1‑24 (MQ=255) aGCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgtgcgcgttagacatgatgaaag < 1:381058‑M2/143‑122 (MQ=255) gCTCACTCACATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaata > 2:38352‑M2/1‑21 (MQ=255) ctcacATATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcag > 1:604958‑M2/1‑16 (MQ=255) cgcacataTCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcag > 2:260621‑M2/3‑16 (MQ=255) tcacATATCGCAACAtttactttaagacaattccaggcaaattatacaccactttacgggatagtaggtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatggagtattcagg < 1:150879‑M2/143‑129 (MQ=255) acaTATCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcaggta < 1:540493‑M2/143‑131 (MQ=255) tCGCAACAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgcgagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcaggtaagggg < 2:372394‑M2/143‑136 (MQ=255) gCAACAtttactttaagacaattccaggcaagttatacaacactttacgggatagtaagtccgcctgaaaaatagcgagagtggcgcattaggtgacccatgttgttccgtttggtcatgatgaaagattcaggtaaggggac < 2:172659‑M2/143‑138 (MQ=255) aaCAtttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattccggtgaggggaatt < 1:58665‑M2/143‑140 (MQ=255) atttactttaagacaattccaggcaaattatacaacactttacgggatagtaagtccgcctgaaaaatcgcgagagtggcgcattaggtgacccatgttgttccgtttagtcatgatgaaatattcaggtaaggggaattatc < 2:497488‑M2/143‑143 (MQ=255) | TTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTACGAACATCTTCCAGGATACTCCTGCAGCGAAAT‑ATTTGTTTTAAGCTCACTCACATATCGCAACATTTACTTTACTTTAAGACAATTCCA‑GGCAAATTATACAACACTTTACGGGATAGTAAGTCCGCCTGAAAAATCGCGAGAGTGGCGCATTAGGTGACCCATGTTGTTCCGTTTAGTCATGATGAAATATTCAGGTAAGGGGA > NC_000913/2023656‑2023936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |