New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2817753 =	53 (0.870)	5 (0.090) +TACGGAGAAT	4/262	8.2	10.5%	intergenic (‑252/+29)	yqaB/argQ	fructose‑1‑P and 6‑phosphogluconate phosphatase/tRNA‑Arg
	?	NC_000913	2818195 =	39 (0.640)					intergenic (‑62/+1)	argZ/argY	tRNA‑Arg/tRNA‑Arg
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATGAGATATTTTTGAAGGAAATTTTTTGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTATTCTACTGCTGATAT  >  NC_000913/2817613‑2817887                                                                                                                                             |                                                                                                                                       aaTGAGATATTTTTGAAGGAAATTTTTTGGAGAAGATGGTGCATCCGGGACGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTCCCTGGTGCCTGCGGGTAATACCGCTATCCCTTCGATccc                                                                                                                                      >  1:1016162/1‑143 (MQ=37)         atTTTTGAAGGAAATTTTTTGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGc                                                                                                                              >  2:692408/1‑143 (MQ=255)         atTTTTGAAGGAAATTTTTTGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGc                                                                                                                              >  2:868617/1‑143 (MQ=255)            tttGAAGGAAATTTTTTGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGa                                                                                                                           <  2:230527/143‑1 (MQ=255)             ttGAAGGATATTTTTTGGAGAAGATGGTGCTTCCTGGTGGCTGACTCACTGTCGTTCGCCTTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTTATTGATGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGaa                                                                                                                          <  1:1039099/143‑1 (MQ=25)             ttGAAGGAACTGTTCTGGAGAAGATGGTGCATCCGGGAGGATGCCTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGaa                                                                                                                          <  2:82826/143‑1 (MQ=255)             ttGAAGGAAATTTTTTGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGaa                                                                                                                          <  1:12214/143‑1 (MQ=255)                          tttGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAat                                                                                                             >  2:97107/1‑143 (MQ=255)                           ttGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAata                                                                                                            >  2:13151/1‑143 (MQ=255)                             ggAGAAGATGGGGCAGCCGGGAGGAGGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCCTACTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATg                                                                                                          <  1:516762/143‑1 (MQ=25)                             ggACAAGATGGTGCATCCGGGAGGTTTACTGACTGACTTTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTATGCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATg                                                                                                          <  1:638393/143‑1 (MQ=21)                               agacgaTGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGt                                                                                                        <  2:461935/143‑1 (MQ=255)                               agaagaTGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGt                                                                                                        <  2:213837/143‑1 (MQ=255)                                         gCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCCTTGCTGAAGGTGACGGAGAATATGGTGCATCCgggg                                                                                              >  2:35205/1‑142 (MQ=255)                                         gCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGgga                                                                                              <  2:132853/143‑1 (MQ=255)                                                 gagcagtaCTCACTGACGTTCGCCCCTCGGGCCGTTGCTGGCTCAACGTTATCCTTCCTGGTGCCTGCGGTTACTACCGCTATCTCTTCGAGACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGa                                                                                      <  1:554510/136‑1 (MQ=21)                                                   ggaggccTCACTGGCGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAAc                                                                                    <  1:312496/137‑1 (MQ=255)                                                     aTGACTCACTGACGTTCGCCCTTCGGGCCGTTGTTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCCCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCt                                                                                  <  2:726676/143‑1 (MQ=255)                                                      tGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTc                                                                                 <  1:1045597/143‑1 (MQ=255)                                                       gACTCACTGACGTTCGCCCTTCGGGCCGTTGCAGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGGTTCGAACCTcc                                                                                >  1:99141/1‑143 (MQ=255)                                                          tCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAGCGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGAc                                                                             >  2:687770/1‑143 (MQ=255)                                                            aCTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGATGGTTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCAGACCg                                                                           >  2:187209/1‑143 (MQ=255)                                                               gACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTc                                                                        >  2:975926/1‑143 (MQ=255)                                                                   ttCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGTTACCTTCATTGCTGCAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGtt                                                                    >  2:398544/1‑143 (MQ=255)                                                                   ttCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGtt                                                                    >  2:395402/1‑143 (MQ=255)                                                                              ggCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGCTACCTTCCTTGCTGAAGGTTACGGCGAATCTGGTGCATCCGGGAGGCTTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGt                                                         >  2:807954/1‑143 (MQ=18)                                                                               gCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTa                                                        <  1:97107/143‑1 (MQ=255)                                                                                ccGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAGCCTCCGACCGCTCGGTTCGTAGCCGAGTAc                                                       <  2:261353/143‑1 (MQ=255)                                                                                 cGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTAct                                                      <  1:102904/143‑1 (MQ=255)                                                                                   ttGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGCAGCCGAGTActac                                                    >  1:244977/1‑141 (MQ=255)                                                                                   tgccTGGCGCGACGTTATCCTTCCTGGTGCCTGCGTTTACTACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATCCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTActct                                                    <  1:208431/140‑1 (MQ=17)                                                                                           gcAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATAGCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCt                                            <  1:119520/143‑1 (MQ=255)                                                                                           gcAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCt                                            <  1:687770/143‑1 (MQ=255)                                                                                            cAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTg                                           <  2:961531/143‑1 (MQ=255)                                                                                                  tATCCTTCCGGGCGCGTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTAc                                     <  2:175901/143‑1 (MQ=255)                                                                                                   aTCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACg                                    <  2:527453/143‑1 (MQ=255)                                                                                                        tcctGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGc                               <  2:568612/143‑1 (MQ=255)                                                                                                                  tGCGGTTAATACCGCTATCTCTTCGATACCTGCATCGCTGAAGGTTACGGAGAATATGGTGCATCCGGGATGATTCTAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGaaaa                     <  2:99141/143‑1 (MQ=255)                                                                                                                    cGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGCGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACt                   <  1:999251/143‑1 (MQ=255)                                                                                                                     ggTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCt                                            >  2:765750/1‑117 (MQ=255)                                                                                                                     ggTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCt                                            <  1:765750/117‑1 (MQ=255)                                                                                                                      gTTAATACCGCTATCTCTGCGATACCTTCATTGCTGAAGGTTACGGAGAATCTGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTa                 <  2:94461/143‑1 (MQ=255)                                                                                                                      gTTAACGCCGCGATCTCTTCTATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTa                 <  2:373430/143‑1 (MQ=255)                                                                                                                        tagtgccGCTATCTCTTCGATCCCGTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTAtt               <  1:146258/138‑1 (MQ=255)                                                                                                                           tACCGCTATCTCTTCGATAGCTTCATGGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTATTCTa            <  1:139754/143‑1 (MQ=255)                                                                                                                            acggCTAGCTCCTCGAGACGTTCAGTGCTGAAGGTTACGGAGAATATAGATCGGCCTGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTATTCTAc           <  2:773041/140‑1 (MQ=14)                                                                                                                            aCCGCTATCTCTTCGATACCTTCATTGCTGAAGGTGACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTATTCTAc           <  1:484322/143‑1 (MQ=255)                                                                                                                                 tATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTa                                                                >  2:828863/1‑85 (MQ=255)                                                                                                                                 tATCTCTTCGATACCTTCATTGCTGAAGATTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTa                                                                <  1:828863/85‑1 (MQ=25)                                                                                                                                     tctTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGCAACCTGATTCtctgtttgtgtg  >  2:942460/1‑132 (MQ=14)                                                                                                                                      ctTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCt                                            >  1:1064900/1‑100 (MQ=39)                                                                                                                                            tACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGaaa                      <  1:34786/116‑1 (MQ=38)                                                                                                                                            tACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGaaa                      >  2:34786/1‑116 (MQ=38)                                                                                                                                             |                                                                                                                                       AATGAGATATTTTTGAAGGAAATTTTTTGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTATTCTACTGCTGATAT  >  NC_000913/2817613‑2817887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.