| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2817753 = | 53 (0.870) | 5 (0.090) +TACGGAGAAT |
4/262 | 8.2 | 10.5% | intergenic (‑252/+29) | yqaB/argQ | fructose‑1‑P and 6‑phosphogluconate phosphatase/tRNA‑Arg |
| ? | NC_000913 | 2818195 = | 39 (0.640) | intergenic (‑62/+1) | argZ/argY | tRNA‑Arg/tRNA‑Arg | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AA‑ATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATCAAGTAAGAG > NC_000913/2818062‑2818335 | cacccGGCACGATTCGAACCCCCGACCGCTCGGTCCGTAGCCGAGTGCTCTATCCAGCCGAGCTACGGATGCATCGGG‑AA‑ATTTATTTTACTGCTGATATTGAGACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATc < 2:771591/140‑1 (MQ=14) ctCGAGCCGCCGCCGGCCCGGTTCGGAGCGGGGTGCTCTTTCCAGCTGAGCTGCGGATGCATCGGG‑AAGCTTTAGTCTTCTGCTGATATTGATACCGCTTGGATGGCCATGGCAAGGAAGAGATGGTGCATCCGGGAGGAtta < 1:643532/142‑2 (MQ=2) ccGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AA‑ATTTATTTTACTGCTGATATTGATACCGCTACTCAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGa > 2:572794/1‑143 (MQ=255) tCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AA‑ATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGCGGATTCGAACCTCCGTCCGCTCgg > 2:742600/1‑143 (MQ=255) gTTCGTTGCTGAGTACTCGATCCAGCTGAGCTACGAGTGCATCGGG‑AG‑ATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTc < 2:317086/143‑1 (MQ=18) gTTCGTAGCCGAGTGCTCCGGCCACCAGCGCTACCTACGCATCGCT‑GA‑ACATTTTTTCCTGCTGCTATTGATGCCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTc < 1:830300/143‑1 (MQ=12) cGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AA‑ATTTATTTTACTGCTGATATTGATACAGCTACTAAAGCCATATCAAATAAGAGATCGTGCAACCGGGAGGATGCGAACCTCCGACCGccgggctctta > 1:483801/1‑133 (MQ=17) cGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AA‑ATTTATTTTACTGCTGATATTGATACCGCTCCTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGTGGATTCCTTCCTCCGCTCGCTCGGTTCGTAGCCggc > 2:629663/1‑141 (MQ=17) tATCCAGCTGAGCTACGGATGCATCGGG‑AA‑ATTTATTTTACTGCTGATATTGATACCGCGACTAAAGCCCTATCAAGTAAGAGATGGTGCATCCGCGAGAATTCGACTCTCCGAGCGGTCGGTCCCTAGcgccgggccctgtc > 1:290595/1‑130 (MQ=17) ccAGCTGAGCTACGGATGCATCGGGAAA‑ACTTATTCTACTGCTGATATTGATACCGCTACTAAAGCCATATCCATTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGGTCGTAGCCGAGTACTCTATCCa > 2:692042/1‑143 (MQ=17) cgCTGGGTTACGGACGCAGCGGC‑AG‑AGGTGTTCTACGGCAGATATTGGGTCCGCTCCTAGAGGCATATCACGTAGGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCt < 1:713683/142‑1 (MQ=9) gcggAGCTACGGATGCATCGGG‑AA‑ATTTAGTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTg < 2:26459/140‑1 (MQ=255) gCTGAGCTACGGATGCATCGGG‑AA‑ATTTATTTTACTGCTGATATTGATACCGCTACTCAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCCCCGTCCGCTCGGTTCCTCGCCGGGTACTCGCTCCAGCTg > 1:746087/1‑143 (MQ=18) tACGGATGCATCGGG‑AA‑ATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATCCGATCCTCCGACCGCTCGGCTCGTAGCCGAGTACTCTATCCAGCTGA‑GCtccc > 1:726981/1‑140 (MQ=255) tCGGG‑AA‑ATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTAGAACCTCCGACCGCTCGATTCGTAGCCGAGTACTCTATCTAGCTGA‑GCTATGGATCCAACgt > 2:533065/1‑142 (MQ=25) tttatttTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAactta > 2:431384/1‑143 (MQ=255) ttatttTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAacttac > 2:468095/1‑143 (MQ=255) ctgctgATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATgg < 1:1004074/47‑1 (MQ=40) ctgATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCACCGGGAAACTTACTCTCCTGCAGa > 2:225339/1‑143 (MQ=255) atatTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCCGAttt > 2:808082/1‑143 (MQ=255) aTACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGAt > 2:507030/1‑143 (MQ=255) cGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCgg < 1:497567/40‑1 (MQ=40) gCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACCCTATCCAGCTGA‑GCTACGGATGCATCGGGAGACTTACTTGGCTGCGGATTTTTTGATACTGc > 2:862768/1‑143 (MQ=18) ctaAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGctact > 2:407684/1‑143 (MQ=255) taAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGctacta > 1:352853/1‑143 (MQ=255) aaGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTaaa < 2:648204/143‑1 (MQ=255) aaGCCATATCAAGTAAGAGAGAGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTaaa < 2:145602/143‑1 (MQ=255) ccAGATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGcc < 2:408855/143‑1 (MQ=255) atatCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTAA‑GCTACGGATGCAACGGGAGATGTACCTTGCTTCCGATTTTTTGATACCGCTACTAAACCCGt > 1:71555/1‑143 (MQ=17) atatCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCAAGAAGATTGCACGG‑TGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGt > 2:490580/1‑143 (MQ=18) tatCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTa > 2:1019297/1‑143 (MQ=255) gatCACGTAAGATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTa < 2:103174/142‑1 (MQ=255) tCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGTAAACTTACTTTACTGCAGATTTTTTGATACAGCTAATAAAGCCGTATc > 1:336775/1‑143 (MQ=255) tcggagaataTGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATCTTTTGATCCCGCCACTAGACCCGTACCaa > 1:66584/10‑143 (MQ=14) aagtaagtGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATCaa < 2:818933/143‑1 (MQ=255) aaGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATCaa < 1:431384/143‑1 (MQ=255) aaGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATCaa < 2:289190/143‑1 (MQ=255) gTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAACGCCGTATCAGGt > 2:96510/1‑143 (MQ=255) aaGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTGGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATCAAGTaa < 2:871685/143‑1 (MQ=255) agaTGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATCAAGTAagag < 2:66584/143‑1 (MQ=255) | CATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AA‑ATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGA‑GCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATCAAGTAAGAG > NC_000913/2818062‑2818335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |