New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4325806 =NA (NA)7 (0.110)
+TACAAATTCCCGCACCCTCCGTAG		 4/236 9.7 14.0% noncoding (4/583 nt) REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences
?NC_000913 4325952 = 52 (0.660)noncoding (150/583 nt) REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTATCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4325899‑4325806
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACG  >  NC_000913/4325952‑4325986
                                                                                              ||||||||||||||||||||||||                                   
TTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATGCGACGTAAACGCCTTAT            <  2:63410/143‑1
     acgCCCTCCGTACGCCGAATAAGGCGCTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGACGCGACGCCTGCGCGTCTGATCAGGCCTACAAATGCCCGCGCCCTGCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGC       <  1:1036052/140‑1
          agcgGTAAGCCGGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGCCAGATGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACG  <  2:618193/139‑1
                                                    GTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATGCGGCGTAAACGCCTT              >  1:273888/1‑89
                                                    GTGCCGACTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCCGGATGCGGCGTAAACGCCTT              <  2:273888/89‑1
                                                                              CGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCC                                  <  1:351417/43‑1
                                                                              CGCGTCTTATCAGGCCTACAAATTCCCGCACCCTCCGTAGGCC                                  >  2:351417/1‑43
                                                                                              ||||||||||||||||||||||||                                   
TTCCCGCACCCTCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACAGTGCCGACTGCCTGATGCGACGCTCGCGCGTCTTATCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4325899‑4325806
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAACGCCTTATCCGGCCTACG  >  NC_000913/4325952‑4325986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.