New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4325806 =	NA (NA)	7 (0.110) +TACAAATTCCCGCACCCTCCGTAG	4/236	9.7	14.0%	noncoding (4/583 nt)	REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences	REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences
	?	NC_000913	4325952 =	52 (0.660)					noncoding (150/583 nt)	REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences	REP325 (repetitive extragenic palindromic) element, contains 12 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGG  >  NC_000913/4325810‑4326087                                                                                                                                               |                                                                                                                                        tgaggaGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAGCGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTg                                                                                                                                         <  2:868274/138‑1 (MQ=255)   ctgcgccgcgcgAGAGTGGCTTGAGGCAGTCGGTACGGTTGCGGGATGCGGCGTGAGCGCCTTATCCGGCGTACGGGGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGGATGCTTCTGAGTAGGCTGTCGGCACCAGTGcc                                                                                                                                       <  2:169244/137‑1 (MQ=2)   atgcgACGCTCGCGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGcc                                                                                                                                       >  1:740583/5‑143 (MQ=255)   aTAAGCCGCGCGGGCGGCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGcc                                                                                                                                       <  2:910628/143‑1 (MQ=255)    taggACGGGCGAGCGTCGGATCAGGCAGTCGGCACTGTTGCCGGATGCTGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCg                                                                                                                                      <  2:1252688/140‑1 (MQ=255)       gACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCggct                                                                                                                                   >  1:988697/1‑141 (MQ=38)                  gTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTCGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAAc                                                                                                                        >  2:1097221/1‑143 (MQ=25)                  gTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTCAAc                                                                                                                        >  1:75066/1‑143 (MQ=25)                  gTCGCATCAGGCAGTCGGCACGGTGGCCGGATGCGGCGTAAACGCCTTATCCGGCATAAGGAGGGTGCGAGAATTTGTAGGCCTGATATGTCGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAAc                                                                                                                        <  1:998250/143‑1 (MQ=11)                    cGCAGCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGc                                                                                                                      <  1:874014/143‑1 (MQ=25)                        tCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATgcggc                                                                                                                              >  1:199464/1‑131 (MQ=35)                           ggCAGGCGGCACTGTCGCCGGATGCGGCGTAAACGCCTTATCCGGCCGACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGAAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATcc                                                                                                               <  1:318286/143‑1 (MQ=255)                             cAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGCTAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGCTGCGGCGTAAACGCCATATCCgg                                                                                                             >  2:155430/1‑143 (MQ=255)                              aGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGc                                                                                                            <  1:711003/143‑1 (MQ=35)                                       tGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAgg                                                                                                   <  1:21557/143‑1 (MQ=32)                                        gTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGACTTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGACGCGCCGTGCACACCTCACCCGCCCTACggccgc                                                                                                  >  2:935984/1‑139 (MQ=11)                                           gCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAGTTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGAGGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGc                                                                                               >  2:828798/1‑143 (MQ=17)                                                      ggTAAGCGCCTTAGCCGGCCTACGGGGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTa                                                                                    <  1:685147/142‑1 (MQ=12)                                                      cgTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTa                                                                                    <  1:1101520/143‑1 (MQ=32)                                                            cGCCATAGCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTg                                                                              <  1:949777/143‑1 (MQ=17)                                                                 tataCGGACTACGGAGGGTGCGGAAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAg                                                                         <  1:863007/143‑1 (MQ=12)                                                                       gCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTg                                                                                                                                         >  1:411693/1‑73 (MQ=34)                                                                       gCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACgcgc                                                                   >  1:108900/1‑143 (MQ=32)                                                                              gAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATa                                                                           >  1:52545/1‑128 (MQ=32)                                                                               aGGGTGCGGGACTTTGGAGGCCGGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCg                                                           <  1:982266/143‑1 (MQ=255)                                                                               aGGATGCAGGAATTTGTAGGCCTGATAAGACGCGAAAGCGCCCCAGCAGGCAGTCGGCACCATGGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCg                                                           <  1:647307/143‑1 (MQ=11)                                                                                gggTGCGGGGATTTGGAGGGCGGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCGGGATGCGGCGTAAACGCCTTATCCGGCCGACGGAGGGTGCGGGAATTTGTAGGCCTGATGCGAcgcttgcgcgtctt                                                          <  2:181058/143‑12 (MQ=11)                                                                                gggTGCGGGAGTGTGGCGGGTTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGc                                                          <  2:185957/143‑1 (MQ=11)                                                                                    gCGGGAATTTGTAGGCCTGCTAAGCCGCGCAGGCGTCGCATCAGGCAGTCGGCACGATTCCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCa                                                      <  2:156884/143‑1 (MQ=11)                                                                                      gggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTa                                                                                    >  2:197928/1‑111 (MQ=32)                                                                                       ggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAc                                                                       >  2:577539/1‑123 (MQ=33)                                                                                       ggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAc                                                                       <  1:577539/123‑1 (MQ=33)                                                                                        cgcgtgggaGGCCTGATAAGACGCGCGAGCGGCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAGCTCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCa                                                  <  2:481802/135‑1 (MQ=11)                                                                                           tttGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTc                                               <  2:378814/143‑1 (MQ=34)                                                                                                    cTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTa                                                                                    >  2:8721/1‑97 (MQ=33)                                                                                                     tGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAg                                                                                   >  1:74635/1‑97 (MQ=34)                                                                                                     tGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCCTCAGGCAGTCGGCACCGTTg                                     >  1:609549/1‑143 (MQ=38)                                                                                                     tGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTg                                     >  2:699865/1‑143 (MQ=39)                                                                                                     tGATAAGACGCGCAAGCGTCGCATCAGGCAGCCGGCACCATTGCCGGGTGCGGCGGAACGGCCTTATCCGGCCTACGGAGCGAGCGGGTATGTGTAGGCCTGATCAGACGCTCACGCGACGCAACAGGCAACCGGCGCCCttc                                     >  2:442696/1‑142 (MQ=2)                                                                                                     tGATAAGACGCGCAAGCGTCGCATCAGCGACTCGGCGCGATTGCCGGATGCAGCGTGAGCACCTCACCGGGGCCGCGGAGGCAGCGGGAAATTGTAGGCCTGATAAGCCGCGCCAGCGTCGCAGCAGGCAGTCGGAAGCGTTg                                     >  2:1047519/1‑143 (MQ=2)                                                                                                         aaGACGCGCAAGCGGCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCgg                                 <  1:1225793/143‑1 (MQ=38)                                                                                                                        cGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGc                                                   >  1:1077728/1‑110 (MQ=33)                                                                                                                        cGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGc                  <  1:811015/143‑1 (MQ=37)                                                                                                                         gCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCTGGAATTTGTAGGCCTGATa                                                                           >  1:321879/1‑85 (MQ=25)                                                                                                                         gCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATaa                                                                          >  2:864084/1‑86 (MQ=35)                                                                                                                             cAGGCAGTCGGCACCGTTGCCGGAGGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTAt             <  1:828798/143‑1 (MQ=17)                                                                                                                              aGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAt                                                                                         >  1:725361/1‑66 (MQ=37)                                                                                                                                  aGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGACGGGGCGTACGCGCCTGATCCGGc        >  2:1359316/1‑143 (MQ=14)                                                                                                                                   gTCGGCACCGTCGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCGGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc       <  1:33791/143‑1 (MQ=12)                                                                                                                                      ggCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATgcggcg                         >  2:274108/1‑122 (MQ=35)                                                                                                                                       gCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACg   <  1:858706/143‑1 (MQ=34)                                                                                                                                        cACCATTGCCGCATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGCATTTGTAGGCCTGATAATACGCGCAAGCGTCGCATCCGGCAGTCGGCACCGTTTCCTGATGCGGCGTACACGCCTCATCCCGCCTGCgc  >  1:894852/1‑142 (MQ=11)                                                                                                                                               |                                                                                                                                        TGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGG  >  NC_000913/4325810‑4326087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.