New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2313545	4 (0.050)	80 (1.040)	66/280	0.1	95.3%	coding (60/2673 nt)	rcsD	phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
	?	NC_000913	2514275 =	NA (NA)					intergenic (+33/‑54)	nupC/insL1	nucleoside (except guanosine) transporter/IS186 transposase

GCCTGAATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC  >  NC_000913/2514133‑2514412                                                                                                                                               |                                                                                                                                          gCCTGAATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCa                                                                                                                                           <  1:520586/143‑1 (MQ=255) gCCTGAATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACAGAAAAAAGCCGGGGATAATTCCCa                                                                                                                                           >  2:1205157/1‑143 (MQ=255) gCCTGAAGGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCGGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCa                                                                                                                                           <  1:947338/143‑1 (MQ=255)  ccTGAATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCAt                                                                                                                                          >  1:793259/1‑143 (MQ=255)          aaGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATCATTCCCATAAGCGCTa                                                                                                                                  >  2:1020193/1‑143 (MQ=255)                agggTGACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTaa                                                                                                                            <  2:1026021/141‑1 (MQ=255)                aaGGTAACGTGGTTTCTCGCTTCGGCCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACGGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTaa                                                                                                                            <  1:271107/143‑1 (MQ=255)                 aGGTAACGTTGTTTCTCGCGTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAg                                                                                                                           <  2:7905/143‑1 (MQ=255)                 aGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACCTAAAAAAGCCGGGGATAGTTCCCATAAGCGCTCACTTAAg                                                                                                                           >  2:932156/1‑143 (MQ=255)                  ggTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCCGGTGAGTGTGCTGTCAGCGTCAATCGCAGCACTGGTGCTCTAAGACCACACATAAAAAAGCAGGGGCTAAGTGCCATAACCGCTAACGCAAgg                                                                                                                          >  2:441669/1‑143 (MQ=255)                        gttgtctctgGCTTCTGTCTGAGGCGGGTTTCCGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCCGCACTGGTTCCGTAAGACCATACATAAGATAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtgtg                                                                                                                    <  2:757510/137‑1 (MQ=255)                            tttCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAAGCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCGAAATTAAGGGGGGTggcag                                                                                                                >  2:212192/1‑140 (MQ=255)                                tcGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCACTCGCAGCCCTGGTGCTGTAAGACCATACATAACAAAGCCGGGGATAATTCCCATAAGCGCTCACCTAAGCGtcggggcaatacc                                                                                                            >  2:46755/1‑131 (MQ=255)                                 cGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGc                                                                                                           <  1:1050699/143‑1 (MQ=255)                                     tCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAAGATGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa                                                                                                       <  1:433192/143‑1 (MQ=255)                                     tCGCTCTGAAGCTGGTTTACGGCTGTACCCTGGTGAGCGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTACGACCATACATAAACAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGa                                                                                                       <  1:1131592/143‑1 (MQ=38)                                       ggtttgagccTGTTTTACGGCTCTACCCTGTGTAGTGTGCTTTCTGCGTCAATCGCAGCACTTGTGCTGTAAGACCATACATAAAAATGCCGGGGATAATGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGata                                                                                                     <  2:1230641/134‑1 (MQ=25)                                          cTGAAGCTGGTTTCCGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGa                                                                                                  <  2:923418/143‑1 (MQ=255)                                           ggaacccggTTTACGGCTCCGCCGTGGTGAGTGTGCTGTCTGCGTCAATCGCAGGACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAt                                                                                                 <  2:689971/136‑1 (MQ=37)                                            gAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt                                                                                                <  2:1138848/143‑1 (MQ=255)                                             aaGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCCTACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATGACGCCTGATATGGttt                                                                                               >  1:439871/1‑143 (MQ=255)                                             aaGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGCTATGAttt                                                                                               >  1:896265/1‑143 (MQ=255)                                                  ggTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACATAAGGGGTGTGGTATTACGCCTggaacgcatgaacgt                                                                                          >  2:917811/1‑129 (MQ=255)                                                   gTTTACGGCTCTACCCTGGTGAGTGTGCTGCACCCAGCTGGGCCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTg                                                                                         <  1:249321/143‑1 (MQ=21)                                                         ggCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGaag                                                                                   >  2:290518/1‑141 (MQ=255)                                                         ggCTCTACCCTGGTGAGTGTGCTGAAAGCGTGAATCGCAGCACTGGTGCAATAGAAAAGGAGAGAGAAGAGGACATGAAAATTCCCATAGGCGCTAACTTAACGGTCGAGGTATTACGCCCGACATGATTTAACGCGCCGacg                                                                                   >  2:967258/1‑141 (MQ=255)                                                          gCTCTACCCTTGTGAGTGGGCTGTCTGCGTGAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGa                                                                                  <  2:346461/143‑1 (MQ=255)                                                            tctACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACGTAAGGGTGGTGGCAGTACGCCAGAAGTGATCTAACGTGCCGATGCAt                                                                                >  2:182819/1‑143 (MQ=255)                                                               aCCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc                                                                             <  1:31948/143‑1 (MQ=255)                                                               aCCCGGGCGAGTGGTCTGTCGCCGTAAATCGGAGCAGTTGGGCTGTAAGACCAAACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAc                                                                             <  2:780566/143‑1 (MQ=18)                                                                cccTGGTGAGTGTGCCGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct                                                                            <  1:307253/143‑1 (MQ=255)                                                                 ccTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTATGGGTTGTGGTATTACGCCTGATATGATTGAACGTGCGGGTGAATTActc                                                                           >  2:683077/1‑143 (MQ=255)                                                                   tGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGAGATGATTTAACGTGCCGATGAATTActcgc                                                                         >  1:407592/1‑141 (MQ=255)                                                                    ggTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCa                                                                        >  2:884071/1‑143 (MQ=255)                                                                     gggtgtgtgtTGACTGGGTCACTCGCAGCGCGTGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAc                                                                       <  2:1214014/139‑1 (MQ=18)                                                                     gTGAGTGTGCTGTCTGCGTCAATCGCAGCACGGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAc                                                                       <  1:1200411/143‑1 (MQ=255)                                                                      tGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACg                                                                      >  1:508853/1‑143 (MQ=255)                                                                          tgtgCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAACAAGCCGGGGATAATTCCCATAAGGGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCGCGATaa                                                                  >  1:1266265/1‑143 (MQ=255)                                                                               tgtgggCGGCAAGCGCAGCACCGGTGCTGCAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGt                                                             <  1:67226/138‑1 (MQ=18)                                                                               tGTTTGTGTCAATCGCAGCACTGGTGCTGTAAGATCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGt                                                             <  2:1273100/143‑1 (MQ=255)                                                                                gtcggggtaaaTCGCAGCACTGG‑GCCGGTAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCa                                                           <  1:951857/134‑1 (MQ=17)                                                                                gTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATACTTCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCGGCTATGATTTAACCTACCGATGCAGTACTCTCACGATAACTgacc                                                            >  2:45338/1‑140 (MQ=25)                                                                                 tCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGCTGGATTACTCCCACGATAACTGGTcg                                                           >  2:517281/1‑142 (MQ=255)                                                                                   tGCGTCACTCGCAGCACTGGTGCTGTACGACCATACATAACAAAGCCGGGGATAATCCCCATTAACGCTAGCTTAAGGGTTGTGGTAGTACGCCTGATGTGATTGAACGTGCCGATGAATTACTCTCACGGTAACTGGTCCGc                                                         >  1:194726/1‑143 (MQ=18)                                                                                    gCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCa                                                        >  1:438736/1‑143 (MQ=255)                                                                                     cGTCAATCGCAGCACTGGTGCTGTAAGACCAGACAGAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGATGTGGTATTACGCCTGAGATGATTTAACGTGGCGATGAGTTAGCCTAACGATAACTGGTCACCaa                                                       >  2:566199/1‑143 (MQ=21)                                                                                      gTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAAt                                                      >  2:669191/1‑143 (MQ=255)                                                                                          aTCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTg                                                  >  2:1101693/1‑143 (MQ=255)                                                                                           tCGCAGCACTGGTGATGCACGGCCAGACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                                                 <  2:215274/143‑1 (MQ=17)                                                                                           agctcacaCCGGTGCCGCATGAGCATACATACAAAAGCCGGGCATAATTCCCATAAGCGCTGACTTAACTGTTTTGGTATTACGCCTGATATGATTTAACGGGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                                                 <  1:1344131/137‑1 (MQ=14)                                                                                            cGCAGCACTTGTGCTTCAAGACCATCCATAAAATAGCCGGCGATAATTCCCATAAGCGCTAACTTAAGGGTCGGGGTATTACGCCTGATATGATTGAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGc                                                <  2:414855/143‑1 (MQ=17)                                                                                            cGCAGCACTGGTTCTGGAACACCATACATAAAAAAGCCGAGCATAATTCCCATAAGCGCTAACGTAAGGGTTGTGGTATTACGCCTGATATGAGTTAACTTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGc                                                <  2:415092/143‑1 (MQ=17)                                                                                            cGCAGCACAGGTGCTGTAAGACCATACATAAAAAAGCCGCGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGc                                                <  1:782420/143‑1 (MQ=255)                                                                                             gcagcaCTGGTGCTGTAAGTGCATACATAGAAAAGCCGGGGATGATTCGCATAAGCGCTAACTTGAGGGTTGGGGTATTACGCGTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGcc                                               <  2:1262478/143‑1 (MQ=17)                                                                                             ccaacacctgTGCGGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGcc                                               <  2:952325/134‑1 (MQ=255)                                                                                                    tagtccTGTAAGACCCTACACAAAATAGCCGGGGATAATTCCCATAAGCGCTAACCTAAGAGTTGTCGTATTACGCCTGATATGATTTAACGTCCCGATGAATTACTCTCACGATAACTTGTCAGCAATTCTGGCCCATATTg                                        <  2:87660/138‑1 (MQ=14)                                                                                                    tGGTGCTGTAGGTCCATAAATAAAAAAGCCGGTGATATGTCCCATAAGCGCTAACTTATGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTg                                        <  2:1143282/143‑1 (MQ=14)                                                                                                    tGGTGCTGTAAGACCACACATCAACAAGCCGGGTATAATGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTAGTCAGCGATTCTGGCCCATATTg                                        <  1:1288837/143‑1 (MQ=17)                                                                                                      gTGCTGTAAGACCATACATAAGAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGt                                      <  1:664531/143‑1 (MQ=255)                                                                                                      gTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGt                                      <  1:662974/143‑1 (MQ=255)                                                                                                         cTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAAAATGACGGGTCAGCAATTCTGGCCCATATTGGTAAg                                   >  1:1284466/1‑143 (MQ=255)                                                                                                          tGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGc                                  >  2:691216/1‑143 (MQ=255)                                                                                                                aCCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCgaag                            <  1:361298/143‑1 (MQ=255)                                                                                                                  catacataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAACAGATCATGAGAGCAATTCTGGCCCATATTGGTAAGCACgaagaa                          >  2:282058/1‑143 (MQ=17)                                                                                                                  cagacataAAAAGGCCGGGGAGAATTCCCGTAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTGAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCgaagaa                          <  2:978885/140‑1 (MQ=14)                                                                                                                     atacaaaagcgCCGGGGATAATTCCACTAATCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATTAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTg                       <  2:778244/133‑1 (MQ=11)                                                                                                                      catgaagaggCCGGGGTTAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTgg                      <  2:558389/134‑1 (MQ=255)                                                                                                                      cataAAACAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTgg                      <  1:996736/143‑1 (MQ=255)                                                                                                                      cataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTgg                      <  1:1363536/143‑1 (MQ=255)                                                                                                                       ataCAAAAGTCGGGGATAATTGCCATAAGCGCTAACTTAAGGGTTGGGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCTCATATTGGTAAGCCCGAAGAACTGGa                     <  1:802163/143‑1 (MQ=11)                                                                                                                       ataCAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGa                     <  1:1024623/143‑1 (MQ=255)                                                                                                                       ataAAAACGCCGTGGCTCATTCCCATAAGCGCTAACTTAAGTGTTGTGGTATTCCGCCGGATATGGTTTGACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTCAGCCCGAAGAACTggc                     <  2:421282/143‑2 (MQ=11)                                                                                                                        taAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGAt                    >  1:1250877/1‑143 (MQ=255)                                                                                                                         actcctaccGGGGAGCATTACCATAACCGCTAACTTAAGGGCTGTGGTATTACACATGCTATGATTTAAAGTGCCGATGAATTACTCTCACGATAACTGGTGAGCAATGATGGCCAAAATTGGTAGTCACGGCGAACTGGATa                   >  2:935359/8‑143 (MQ=2)                                                                                                                          gaaaaGCCGGGGATAATGCCCATAAGCGCGAACGTAAGGGGTGTGGTATTACGCCGGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATAc                  <  1:355805/142‑1 (MQ=14)                                                                                                                           aaaaGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACt                 >  2:510496/1‑143 (MQ=40)                                                                                                                              aGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCg              <  1:1328830/143‑1 (MQ=38)                                                                                                                                ccGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACCTCGGc            >  2:40389/1‑143 (MQ=37)                                                                                                                                ccGGGGATAATGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATACGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGc            <  1:637152/143‑1 (MQ=25)                                                                                                                                  ggggATAATTCCCATCAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATAATGGTAAGCCAGAAGCACTGGATACTTCGGCAc          >  2:1149809/1‑143 (MQ=255)                                                                                                                                  ggggATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGcca          >  1:410846/1‑141 (MQ=25)                                                                                                                                   gggATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACg         >  1:608110/1‑143 (MQ=35)                                                                                                                                    ggATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGt        <  1:1101693/143‑1 (MQ=34)                                                                                                                                     gATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTa       >  1:488640/1‑143 (MQ=34)                                                                                                                                        aaTTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACCGGATACTTCGGCACGTAATg    >  2:646442/1‑143 (MQ=17)                                                                                                                                          ttCCCATAAGCGCTAACTTAAGGGTTGCGGTATTACTCCTGATATGATTTAACGTGCCGCTGACTTACTCTCACGATAACTGGTCAGCAACGCGAGCCCACCATGGTCACCCCGAAGGACTAGATAATCCTGCAcaccacgac  >  2:731986/1‑135 (MQ=2)                                                                                                                                               |                                                                                                                                          GCCTGAATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC  >  NC_000913/2514133‑2514412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.