Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 257908–258674 258683 10–776 82 [0] [0] 82 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2579070 (0.000)79 (1.070) 55/268 0.2 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers

TGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913/257766‑258049
                                                                                                                                             |                                                                                                                                              
tggtaaaATTTTGATAAATGTTGCCAATGTGGTAAAACCGTTGCATCACAACAGGAGATAGCAATGACATTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa                                                                                                                                               <  2:1258447‑M1/140‑2 (MQ=255)
  ttAAAAATTTGCTCAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                             <  1:464101‑M1/143‑4 (MQ=255)
  ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTGTATTCGTGAAGGTAagt                                                                                                                                             >  1:1301924‑M1/1‑140 (MQ=255)
  ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTACATTCGTGAAGGTAagt                                                                                                                                             >  1:82220‑M1/1‑140 (MQ=255)
  ttAAAAATTTGCTAAATTTTGCCAATTTGGCAAAACAGTTGCATCACAACAGAAGATAGCAATGACGTTACCGAGCGCACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCGCGTATATTCGTGAAGGTAagt                                                                                                                                             >  1:1216455‑M1/1‑140 (MQ=255)
      aaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTACGCCCGCATATTCGTGACGGTAcgtccaa                                                                                                                                         >  2:1086457‑M1/1‑136 (MQ=255)
              tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTGGTGAAGGTAaggtcatagatacac                                                                                                                                 >  2:808089‑M1/1‑128 (MQ=255)
              tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGACGGTAagtgcgaagataatc                                                                                                                                 >  1:226619‑M1/1‑128 (MQ=255)
              tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatc                                                                                                                                 >  1:1107146‑M1/1‑128 (MQ=255)
                aaTTTTGCGAATTTGCTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcga                                                                                                                               <  1:500009‑M1/143‑18 (MQ=255)
                   tttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattc                                                                                                                            >  1:66458‑M1/1‑123 (MQ=255)
                     tGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGGAGGTAagtgcaaagataatcgattctt                                                                                                                          >  1:307456‑M1/1‑121 (MQ=255)
                        cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt                                                                                                                       <  1:1122262‑M1/143‑26 (MQ=255)
                         aaTTTGGTAAAACAGTTGCAGCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                      <  1:792038‑M1/143‑27 (MQ=255)
                              ggTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaacgataatcgatgctttctcgagtg                                                                                                                 >  2:68194‑M1/1‑112 (MQ=255)
                                tAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagatagtcgattctttttcgattgca                                                                                                               >  2:234324‑M1/1‑110 (MQ=255)
                                 aaaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct                                                                                                              >  2:1160424‑M1/1‑109 (MQ=255)
                                 aaaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct                                                                                                              <  2:1117715‑M1/143‑35 (MQ=255)
                                 aaaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct                                                                                                              >  1:158042‑M1/1‑109 (MQ=255)
                                  aaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagctaatcggctctttttcgattgtctg                                                                                                             >  2:328920‑M1/1‑108 (MQ=255)
                                  aaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgaatctttttcgcttgtctg                                                                                                             >  2:1145912‑M1/1‑108 (MQ=255)
                                   aaCAGTGGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                            <  1:1175293‑M1/143‑37 (MQ=255)
                                     cAGTTGCATCACAACAGGAGATGGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct                                                                                                          <  2:935196‑M1/143‑39 (MQ=255)
                                        ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgta                                                                                                       <  1:333288‑M1/143‑42 (MQ=255)
                                        ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgta                                                                                                       <  1:58818‑M1/143‑42 (MQ=255)
                                          gCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatg                                                                                                     >  1:33759‑M1/1‑100 (MQ=255)
                                           cagcgcacgagtagatagtaatgccggTACCGAGTGGACACGCGAAGAGCAGATTGATCAAAAAAGTGACCGCACTAGGTCCGTATTGTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc                                                                                                    <  2:704211‑M1/131‑45 (MQ=255)
                                           cATCACAACAGGGTATAGCAATGGCTTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgc                                                                                                    <  2:284771‑M1/143‑45 (MQ=255)
                                              caccacAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtc                                                                                                 <  1:288495‑M1/143‑48 (MQ=255)
                                              cacaACAGGATACAGCCAGGACTTTACCGAGTGGACCCCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCTGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtc                                                                                                 <  1:1224662‑M1/143‑48 (MQ=255)
                                                 aacaGGATATATCAATGACGTTACCGAATGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                              <  1:1030144‑M1/143‑51 (MQ=255)
                                                 aacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcgac                                                                                              >  1:664698‑M1/1‑93 (MQ=255)
                                                 aacaGGAGAAAGCAATGACGTTACGGAGTGGCCACCCGAAGAGCAGATTGAGCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                              <  1:677318‑M1/143‑51 (MQ=255)
                                                 aaaaataaatattaatgacgttacctagTGAACACCCGAAGAGCAGATAGAACAAAAAAGTAACCGCCCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac                                                                                              <  1:1320158‑M1/130‑51 (MQ=255)
                                                   caGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgtaaagataatcgattctttttcgattgtctggctgtatgcgccaacgt                                                                                            <  2:908488‑M1/143‑53 (MQ=255)
                                                      gagaTAGCAATGACGTTACCGAGTGGACACCCGCAGAGCAGATTCATCAAAAAATTTACCGCACTAGGCCCGTCTATTCGCGAAGGGAagtgccaagataatcgattctttttcgattggctggctgtctgcgtcaccgtgaa                                                                                         >  2:524577‑M1/1‑88 (MQ=255)
                                                         aTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc                                                                                      <  1:1004273‑M1/143‑59 (MQ=255)
                                                         aTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgcgacacc                                                                                      >  1:837019‑M1/1‑85 (MQ=255)
                                                           aGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttgcgattgtctggctgtatgcgtcaacgtgaaaccgg                                                                                    <  2:259409‑M1/143‑61 (MQ=255)
                                                              aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCGGTGTATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtatggctgtatgcgtcaacgtgaaacgggcag                                                                                 >  1:1283066‑M1/1‑80 (MQ=255)
                                                              aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcac                                                                                 >  2:813075‑M1/1‑80 (MQ=255)
                                                              aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtaaacgtgaaaccggcac                                                                                 >  2:122369‑M1/1‑80 (MQ=255)
                                                              aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGAAagtgaaaagataatcgattctttttcgatagtatggctgtatgcgtcaacgtgacaccggcac                                                                                 >  2:1030370‑M1/1‑80 (MQ=255)
                                                               aTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaacgataatcgattctttttcgattgtctggctgtatcatctgacgttaaaccggcacc                                                                                >  1:681826‑M1/1‑79 (MQ=255)
                                                                       aaagagtGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGGAagtgcaaagataatcgattctttttcgattgtcgggctgtatactgcacagtgacacgggccccgggagcgc                                                                        >  2:837643‑M1/4‑71 (MQ=255)
                                                                         cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                      >  2:137244‑M1/1‑69 (MQ=255)
                                                                          gAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgcaaccagcaccggacgtgcgtg                                                                     >  2:940304‑M1/1‑68 (MQ=255)
                                                                                acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaggtgcgtggattct                                                               >  1:1204123‑M1/1‑62 (MQ=255)
                                                                                 cacCCGCAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctg                                                              <  2:479935‑M1/143‑83 (MQ=255)
                                                                                  acCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtctgcgtcaacgtgaaaccggcaccggaagcgcgcggcttctgg                                                             >  1:822656‑M1/1‑60 (MQ=255)
                                                                                   ccagcagagcagatTGATCAAAGAGTTTACCGCACTAGGCCCGTATATGCGTGAAGGTAagtgcaaagataatcgattctctttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgcg                                                            <  2:985904‑M1/138‑85 (MQ=255)
                                                                                            cAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgga                                                   >  2:1231245‑M1/1‑50 (MQ=255)
                                                                                            cAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaatgctggggctggtgga                                                   >  1:1249671‑M1/1‑50 (MQ=255)
                                                                                             aGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgggaattcgggggctggtggat                                                  >  1:148259‑M1/1‑49 (MQ=255)
                                                                                              gATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatg                                                 >  1:312136‑M1/1‑48 (MQ=255)
                                                                                              gATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatg                                                 <  1:808089‑M1/143‑96 (MQ=255)
                                                                                              gATTGATCAAAAAATCTACCGCACTAGGCCCGTATATGCGTGAAGGGAagtgcaaagataagcgattcttttgcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatg                                                 <  1:188714‑M1/143‑96 (MQ=255)
                                                                                                  gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGGGAAGGAAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtaaacgtgaaaccgccaccggaagggcgtgaatactggggatcatgggtggaga                                             >  2:174522‑M1/1‑44 (MQ=255)
                                                                                                   aTCAAAAAATTTACCTCATTAGGCCCGTATATTCGTGAAGGTAagttcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct                                            <  2:771689‑M1/143‑101 (MQ=255)
                                                                                                    tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcacagataatcgcttctttttcgattgtcgggcggtatgcgtacacgtgaaaccggcaccggaagtgcgaggcttatgcggctggtgtctggagctg                                           >  1:525271‑M1/1‑42 (MQ=255)
                                                                                                    tCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctg                                           >  2:1177203‑M1/1‑42 (MQ=255)
                                                                                                       aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggctggagctggaa                                        >  1:83626‑M1/1‑39 (MQ=255)
                                                                                                       aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaa                                        >  1:272472‑M1/1‑39 (MQ=255)
                                                                                                       aaaaaGTTACCGCACTAGGCCCGGATATGCGTGAAGGTAagtgcaaagataatcgattctttttcgagtgtctggcggtatgcgtcaacgtgaaaccggcaccggcagggcgtgaattcttgggctggtggatggagctggag                                        >  1:581453‑M1/1‑39 (MQ=255)
                                                                                                          aaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcg                                     <  2:619804‑M1/143‑108 (MQ=255)
                                                                                                                 cGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggcat                              >  1:1259148‑M1/1‑29 (MQ=255)
                                                                                                                 cGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgagtctttttcgattgtatggctgtatccgtcaacgtgaaaccggcaccggaagtgcgtgaattctggcgccggtggatggagttggatgggcacgaac                              >  2:876349‑M1/1‑29 (MQ=255)
                                                                                                                  gCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatc                             <  1:813075‑M1/143‑116 (MQ=255)
                                                                                                                   cACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgagtgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggctggagctggaagcgcgggaatcc                            >  2:951207‑M1/1‑27 (MQ=255)
                                                                                                                   cACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgatgctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcc                            <  1:1271047‑M1/143‑117 (MQ=255)
                                                                                                                     cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccg                          >  1:1175178‑M1/1‑25 (MQ=255)
                                                                                                                       aGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaatgctggggctggaggatggagctggaagcgcaggaatcgcgtg                        >  1:154933‑M1/1‑23 (MQ=255)
                                                                                                                        ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttt                       <  1:411530‑M1/143‑122 (MQ=255)
                                                                                                                          cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttta                     <  1:675707‑M1/143‑124 (MQ=255)
                                                                                                                           ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                    <  1:1335911‑M1/143‑125 (MQ=255)
                                                                                                                              tgtattcGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta                 <  2:559813‑M1/141‑128 (MQ=255)
                                                                                                                              tatcTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgcaaccggcaccggaagtgcgtgaattgtgggactggtgcatgggtatggcagcgaaggaatcccgctttacctc                 >  2:1231362‑M1/1‑16 (MQ=255)
                                                                                                                                   tCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccggtgtacgtacggtg            >  2:352023‑M1/1‑11 (MQ=255)
                                                                                                                                   tCGTGAAGGTAagtgcaaagataatcgattctttttcgaaggactggctgtatgcgtcaacgtgaaaccgtcacccgaagtgcgtgaaacctggggctggcggctggcactgcacgcgcaggaatcccgttctacctacagtt            >  2:1035886‑M1/1‑11 (MQ=255)
                                                                                                                                       gAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacca        <  2:272472‑M1/143‑137 (MQ=255)
                                                                                                                                       gAAGGAAagggcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacca        <  1:841182‑M1/143‑137 (MQ=255)
                                                                                                                                             aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatccagttttacctacagttaccagtttgg  >  1:945608‑M1/1‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                              
TGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913/257766‑258049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: