Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979269	1979278	10–776	93 [0]	[0] 94	insB1–insA	insB1, insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	85 (1.150)	66/268	0.0	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

GGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/1978361‑1978643                                                                                                                                               |                                                                                                                                              gggTCTTTACACTTATCTAAGATTTTTCCTAAATCCACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCCATTACGTAACATAAATGt                                                                                                                                              >  2:1244738‑M1/1‑142 (MQ=255)   gTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtat                                                                                                                                            >  1:962266‑M1/1‑140 (MQ=255)     ccgtacaGTAATCTAAGATTTTTCCTAAAACGAGGCAACTGTAGTCGTCACCACACGCACATACAACTGAGGGGGGCTGCGATTTTCAATAATGCATAATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                          <  2:1254503‑M1/140‑6 (MQ=255)      tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACCGTCAATTACTTAACATAAATGtatagg                                                                                                                                         >  1:786738‑M1/1‑137 (MQ=255)       tcacacgtATCTAAGATTTTTCCTTAATCGTCGGAATTGTACTCGTCACTACACGCACATCCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                                                                        <  1:1282843‑M1/141‑8 (MQ=255)         acacTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtca                                                                                                                                      <  1:716339‑M1/143‑10 (MQ=255)              tATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatactt                                                                                                                                 <  2:321160‑M1/143‑15 (MQ=255)                 cTAAGATGTTTCCGAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                                                              <  2:980118‑M1/143‑18 (MQ=255)                  tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataactcatacttttgt                                                                                                                             >  2:1294703‑M1/1‑125 (MQ=255)                  tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGAGCAC‑ACAAAACACTCAATTACTTAACATAAATGaataagccatactctcga                                                                                                                             >  2:739912‑M1/1‑125 (MQ=255)                   aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgct                                                                                                                            >  2:267469‑M1/1‑124 (MQ=255)                    aGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt                                                                                                                           >  1:893042‑M1/1‑123 (MQ=255)                    aGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACAGACAACGGAGGGGGGCTGCGATTTTCAATAATGCGAGAGGCAGATCAC‑GCAAAACACTCAATTACTTAACATAAATGtatacgtcatactttcgttt                                                                                                                           >  2:825491‑M1/1‑123 (MQ=255)                     ggttttgccTAAATCGACGCCACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                          <  2:436644‑M1/141‑22 (MQ=255)                     gATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                          <  1:1008461‑M1/143‑22 (MQ=255)                      aTTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                         >  1:580425‑M1/1‑121 (MQ=255)                       tttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                        <  1:1025851‑M1/143‑24 (MQ=255)                       tttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttctgg                                                                                                                        <  1:601538‑M1/143‑24 (MQ=255)                            ccTAATTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGTTTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgta                                                                                                                   <  1:841634‑M1/143‑29 (MQ=255)                               aaaTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATTgataattcaaacttttgttttgggagtactt                                                                                                                >  2:615727‑M1/1‑112 (MQ=255)                                  tCGACGCAACTGTACTCGCCACAACACGCGCGTACGACGGAGGGGAGCTGCTATTGTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                                                             <  1:504995‑M1/143‑35 (MQ=255)                                   cgccgcaACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                            <  1:90238‑M1/140‑36 (MQ=255)                                   cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                            <  1:327272‑M1/143‑36 (MQ=255)                                    gACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGAGTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatactgttgttttgagtgtatatgaatc                                                                                                           >  2:176774‑M1/1‑107 (MQ=255)                                     aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACAATCAATTACTTAACATAAATGtataagacatacttttgttttgggtgtatttcaatct                                                                                                          >  2:1024565‑M1/1‑106 (MQ=255)                                      cGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                                                                         >  2:1217456‑M1/1‑105 (MQ=255)                                         aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTCACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtta                                                                                                      >  2:628266‑M1/1‑102 (MQ=255)                                         aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggcgtatttcaatctgtta                                                                                                      >  2:510184‑M1/1‑102 (MQ=255)                                            tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa                                                                                                   >  2:165315‑M1/1‑99 (MQ=255)                                                cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtctttcaatctgttcaaatgtt                                                                                               >  2:863572‑M1/1‑95 (MQ=255)                                                 tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                              >  1:968613‑M1/1‑94 (MQ=255)                                                 tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttccgggagtacgtctatctgttaaaaagttg                                                                                              >  1:1278975‑M1/1‑94 (MQ=255)                                                   gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAG‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatatgttaacaagttttt                                                                                            >  2:453235‑M1/1‑92 (MQ=255)                                                   gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                            <  1:556851‑M1/143‑52 (MQ=255)                                                   gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGAACAC‑ACAAAACAGTCAATTACTTAACATAAATGgatacgtcagacctttgtcttgggtgtatttcaatctgctaaaaagttgtt                                                                                            >  2:453417‑M1/1‑92 (MQ=255)                                                           acGCACATACATCGGAGGGTGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                    <  2:422358‑M1/143‑60 (MQ=255)                                                           acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCTAAACAC‑ACAAAACCCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                    <  1:929348‑M1/143‑60 (MQ=255)                                                           acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                    >  1:876907‑M1/1‑84 (MQ=255)                                                               acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                                <  1:16866‑M1/143‑64 (MQ=255)                                                               acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                                >  1:833574‑M1/1‑80 (MQ=255)                                                                 aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATGAA‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                                                              >  1:516407‑M1/1‑78 (MQ=255)                                                                  tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgttagcaag                                                                             >  2:900383‑M1/1‑77 (MQ=255)                                                                   aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcatgc                                                                            >  2:1136291‑M1/1‑76 (MQ=255)                                                                     tacGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                                                                          <  1:1342158‑M1/142‑70 (MQ=255)                                                                     aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                                                                          >  1:807252‑M1/1‑74 (MQ=255)                                                                        ggAGGGGGGCTGCGATTTTCAATAATGCGTTATGCAGATCAC‑ACAAATCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                       <  2:63565‑M1/143‑73 (MQ=255)                                                                        ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttctttctgttaaaaagtttttcgctccgctagcaagcaaaaa                                                                       >  1:143008‑M1/1‑71 (MQ=255)                                                                          aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatg                                                                     >  2:642948‑M1/1‑69 (MQ=255)                                                                           ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacactcgcaagcaaaaatga                                                                    >  2:70557‑M1/1‑68 (MQ=255)                                                                            gggggCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtatacgtcatacttttgttttgggtgtatttcactctgttaaaaagtttttcgctacgctagcacgcaacaatgaa                                                                   >  1:1146150‑M1/1‑67 (MQ=255)                                                                                gCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacag                                                               >  1:967111‑M1/1‑63 (MQ=255)                                                                                  tGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaaacaaacatgaaacccga                                                             >  2:403929‑M1/1‑61 (MQ=255)                                                                                        tttCAATAATGCGTGATGCGGATCAC‑AAAACACACTCATATACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc                                                       <  1:1286537‑M1/143‑89 (MQ=255)                                                                                        gttcAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc                                                       <  1:1319156‑M1/142‑89 (MQ=255)                                                                                         ttCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcg                                                      >  1:320920‑M1/1‑54 (MQ=255)                                                                                          tCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcga                                                     >  1:1033343‑M1/1‑53 (MQ=255)                                                                                             ataatGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat                                                  <  1:24069‑M1/143‑94 (MQ=255)                                                                                              taatGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg                                                 >  1:1343723‑M1/1‑49 (MQ=255)                                                                                               aatGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg                                                <  1:1024846‑M1/143‑96 (MQ=255)                                                                                               aatGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg                                                >  1:783735‑M1/1‑48 (MQ=255)                                                                                               aaggcgtGATGCAGA‑CACAACATGGCGCTCTATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagcaataatcgaaatgg                                                <  2:534082‑M1/140‑96 (MQ=255)                                                                                                 cgcGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGgataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttagctacgctagtaagcaaaaatgaaacaggaataatcgaaatggga                                              <  2:972982‑M1/142‑98 (MQ=255)                                                                                                    gTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctcgcaagcaaaaatgaaacaggaataatcgaaatgggatat                                           >  1:473300‑M1/1‑43 (MQ=255)                                                                                                         gCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgc                                      >  1:1155894‑M1/1‑38 (MQ=255)                                                                                                               cac‑acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtc                                <  1:299650‑M1/143‑112 (MQ=255)                                                                                                                ac‑acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttcaaaagtttttcgctaagctagcaggcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                               >  1:163798‑M1/1‑31 (MQ=255)                                                                                                                 c‑acaAAACACTCAATTACTTGACATAAATGtataagtcatacttttgttttgggtggatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaa                              <  1:952450‑M1/143‑114 (MQ=255)                                                                                                                 c‑acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctcgcaagcaataattaaacaggaataatcgaaatgggatgttgcgcacagtcac                              >  1:1290396‑M1/1‑30 (MQ=255)                                                                                                                 c‑acaAAACACTCAATGACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgagatgggatgttgcgaacagtcaa                              >  2:1148729‑M1/1‑30 (MQ=255)                                                                                                                   acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                             >  2:877327‑M1/1‑29 (MQ=255)                                                                                                                   acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgaacagaaaaa                             >  2:696975‑M1/1‑29 (MQ=255)                                                                                                                    caAAACACTCAATTACTTATCATAAATTtataactcatacttttgttttgggtgtatttcaatctgttaaaaagtttttctctacgctagcaagcaaaaatgaaacagtaataatcgaaatgggatgttgcgcacagtcaaaa                            <  2:363837‑M1/143‑116 (MQ=255)                                                                                                                       aaCACTCAATTACTTAACATAAATGtataagtcatactgttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                         <  1:1337265‑M1/143‑119 (MQ=255)                                                                                                                       aaCACTCAATTACTGAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                         <  1:369753‑M1/143‑119 (MQ=255)                                                                                                                          actcgtttcgttaacttacatgtataagtcagacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactc                      <  2:1032873‑M1/133‑122 (MQ=255)                                                                                                                            tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtttatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataattgaaataggctgttgataacagtaaaaataagtcac                    >  2:776815‑M1/1‑20 (MQ=255)                                                                                                                             cAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcacc                   >  1:131024‑M1/1‑19 (MQ=255)                                                                                                                              aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcagactgagcgaccg                  >  1:681735‑M1/1‑18 (MQ=255)                                                                                                                              aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccg                  <  1:895599‑M1/143‑126 (MQ=255)                                                                                                                               aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgt                 <  1:165315‑M1/143‑127 (MQ=255)                                                                                                                               aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgt                 >  1:798229‑M1/1‑17 (MQ=255)                                                                                                                                   cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgagatgttgcgcacagtccaaataactaaccgtaaat             >  2:840393‑M1/1‑13 (MQ=255)                                                                                                                                    ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata            >  2:1050204‑M1/1‑12 (MQ=255)                                                                                                                                    ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata            >  1:672732‑M1/1‑12 (MQ=255)                                                                                                                                       aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatc         >  2:701285‑M1/1‑9 (MQ=255)                                                                                                                                        cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatca        >  1:422289‑M1/1‑8 (MQ=255)                                                                                                                                         aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcgaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactccccgtaaataatcac       >  1:417103‑M1/1‑7 (MQ=255)                                                                                                                                         aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagtaataatcgaaatgggatgttccgcacagtcaaaataactcaacgtacataataat       >  2:602579‑M1/1‑7 (MQ=255)                                                                                                                                         aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaattggatgttgcgcacagtcaaaataactcaccgtaaataatcat       >  2:1150083‑M1/1‑7 (MQ=255)                                                                                                                                            aaTGtataagtcatacttttggtgtgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctg    <  1:1244738‑M1/143‑140 (MQ=255)                                                                                                                                              tGtataagtcatacttttgttttgggtgtatttcactctgttaaaaagtttttcgctacgcgagcatgcaaaactgaaacaggaataatcgacacgggtgcttgcgcacagccaaaataactcaccgtaaatgatcatccggt  >  2:766997‑M1/1‑2 (MQ=255)                                                                                                                                              tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatgatctgat  >  1:1049189‑M1/1‑2 (MQ=255)                                                                                                                                              tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgct  >  1:797608‑M1/1‑2 (MQ=255)                                                                                                                                               |                                                                                                                                              GGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAC‑ACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/1978361‑1978643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑