New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =19 (0.420)15 (0.380) 14/252 2.1 41.2% coding (290/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 1209619 = 26 (0.650)pseudogene (1/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

TGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCC  >  NC_000913/1207649‑1207932
                                                                                                                                             |                                                                                                                                              
tggttgAGGCCTGCGGTGCCAGGCTGGAGGAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT                                                                                                                                               <  2:775461‑M1/143‑1 (MQ=255)
ggctggtttcagcgcatcgcgttgtagatctgtgtgctggtcatttgttgatccgcgtacatagccaatgagcatgttacatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgtt                                                                                                                                               >  2:437628‑M1/142‑143 (MQ=255)
 ggtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCACATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCCTG                                                                                                                                              >  1:770594‑M1/1‑143 (MQ=255)
 gcacggttcagcgcattacgtggtagatctgtgttctggtcatttgttggtacgcgtacatagccaataagcatggtaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTg                                                                                                                                              >  2:518558‑M1/141‑143 (MQ=255)
    ggggggatccgtgGCCAGCCTGGAGCAGGGGTGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAACCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTT                                                                                                                                           <  2:385358‑M1/137‑1 (MQ=255)
       tgcATCCGGCGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG                                                                                                                                        <  2:8618‑M1/142‑1 (MQ=255)
        tcagcgcattacgttgtagatctgtgttctgttcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTggg                                                                                                                                       >  1:716670‑M1/134‑143 (MQ=255)
         gctccGGTGCCAGCCTGGAGGAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGA                                                                                                                                      <  1:786476‑M1/141‑1 (MQ=255)
           tCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGGATCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTCGGAGTGGGAGA                                                                                                                                    >  1:292770‑M1/1‑143 (MQ=255)
            ccGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTTCAAACGGCTCTCGACAAACTTGGATTGGatgcg                                                                                                                                   >  1:695086‑M1/1‑138 (MQ=255)
             ggcggCCGGCCTTGCGAGGGGGCGTCACGACCAGTTGCTTCTCGCACTTCGCGCTCTTCTGTTCGGCCGCAAGAATCTGTTTGGCGATGTCAAATCGGATGGGACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAg                                                                                                                                  <  2:39948/139‑1 (MQ=17)
              cagtactttgtagatctgtgttctggtcatttgttgatacgcgtacctagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg                                                                                                                                 >  2:191510‑M1/128‑143 (MQ=255)
               gTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa                                                                                                                                <  2:182601/143‑1 (MQ=255)
               ctgcctgccTGGCGACCGCTCGGCACGCCCAGTTACTTACCCCACTTCGCGCGCTGCTGTTAAGCCGCAAGAACCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa                                                                                                                                <  2:415808/142‑1 (MQ=17)
                tGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCAGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCACTCGAAACCCTACGTCTGGGcaacggcg                                                                                                                               >  2:187722‑M1/1‑135 (MQ=255)
                     ttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaaa                                                                                                                          >  1:606373‑M1/121‑143 (MQ=255)
                        tagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatcatcctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGATAATTAGCAGAACTc                                                                                                                       <  2:738778‑M1/26‑1 (MQ=255)
                               gtgtgctggtcagttgttgacacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag                                                                                                                >  2:368687‑M1/111‑143 (MQ=255)
                               ggggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttg                                                                                                                <  1:448840‑M1/143‑18 (MQ=255)
                                 ggcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt                                                                                                              <  1:628768‑M1/143‑20 (MQ=255)
                                       gtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcagcaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGACGGAGCAAAACTCCATGCAGCAACGGCt                                                                                                        <  2:129995‑M1/41‑1 (MQ=255)
                                              gTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGCCACTGTGCAAACGGCTCTCGAACACCCTGGCTTGGGAGCCGGcgccgcatgacctcttcgtgtcccggcgccgt                                                                                                 >  2:748493‑M1/1‑111 (MQ=255)
                                               ttccttgcCGGACTTCGCGGGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg                                                                                                <  2:785853/140‑1 (MQ=255)
                                               ttacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCCCTGTGCAACCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg                                                                                                >  1:132761‑M1/1‑110 (MQ=255)
                                                tacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg                                                                                               >  1:599305‑M1/1‑109 (MQ=255)
                                                  cttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACg                                                                                             >  1:333702/1‑143 (MQ=255)
                                                        gCAGTTCGCGCGCTGGTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg                                                                                       <  2:359715/143‑1 (MQ=255)
                                                        gCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTATGACGCACCgg                                                                                       >  2:287764/1‑143 (MQ=255)
                                                        gCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTAAATGAAGCAACGGCTAAAGTAGGaagaacagg                                                                                       >  2:49367/1‑135 (MQ=18)
                                                            ttCGCTCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGCTATCAAATCGGATGGCACTGTGCAAACGGCACTCGCAACCCATGGTTTGGGAGAAGGcgctgcactacctcttggtgtcccggttccgtggcctgcagccgcc                                                                                   >  2:390204‑M1/1‑97 (MQ=255)
                                                            ttCGCGCGCTGCTGTTAAGCCGGAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccact                                                                                   <  1:341058‑M1/143‑47 (MQ=255)
                                                                ccaataagcatgttaactccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg                                                                               >  2:20449‑M1/78‑143 (MQ=255)
                                                                ccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg                                                                               >  1:417690‑M1/78‑143 (MQ=255)
                                                                ccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGCTTCATAg                                                                               <  2:23285‑M1/66‑1 (MQ=255)
                                                                   gctgctGTTAAGCAGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCta                                                                            <  2:238107/143‑1 (MQ=255)
                                                                   ataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCta                                                                            >  1:345929‑M1/75‑143 (MQ=255)
                                                                     tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggagtcccggttccgtggccctcagccaccccgccaaca                                                                          >  2:510626‑M1/1‑88 (MQ=255)
                                                                                            gtcgccgatatCAAGTCGGATGCCACCGTGCGAGCGGCTCTCGAGACCCTTGGGTTGGGAGAAGGctccgcagtacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgc                                                   <  2:417673‑M1/138‑79 (MQ=255)
                                                                                            aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                   >  1:186020‑M1/50‑143 (MQ=255)
                                                                                                 cGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgacatgcaatggtgccgctt                                              >  1:367930‑M1/1‑60 (MQ=255)
                                                                                                  gATTTCAAATCGGATGGTACTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGTAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATc                                             <  1:455597/143‑1 (MQ=255)
                                                                                                  gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAACACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGACTGGTGCTATTGCGCAATc                                             >  2:95929/1‑143 (MQ=255)
                                                                                                  gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACGTTAGGACGCACCGGTTTCATAGCTATAACAGTAATGATTAGTGGTATTAAGCAATc                                             >  1:201614/1‑143 (MQ=38)
                                                                                                  gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATc                                             >  1:678482/1‑143 (MQ=255)
                                                                                                        aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcaataccagttggtgtcccggttccgtggccttcagccactccgccaccaggctggctgacatgcaatggtgccgctttttctgc                                       >  2:313090‑M1/1‑53 (MQ=255)
                                                                                                            catttgcctgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAtt                                   >  1:235211‑M1/34‑143 (MQ=255)
                                                                                                              tttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAAtcatgca                                 <  1:69606‑M1/112‑4 (MQ=255)
                                                                                                                 ggCACTGTGCCAACGGCCCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGTACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTg                              <  1:544948/143‑1 (MQ=255)
                                                                                                                  gCAATGCGCAAACGGCACTCGAAAACCTTGGGTTGGGAGAAGGGGCAAAACTCAAGGCAGTAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgg                             <  2:241116/143‑1 (MQ=255)
                                                                                                                    tgttattgcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg                           >  1:175981‑M1/26‑143 (MQ=255)
                                                                                                                     gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTCTTGAGCAATCAGCAATCATTCAGTgcggg                          <  2:383092‑M1/119‑1 (MQ=255)
                                                                                                                     cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcgaaccggctggctgaaatgcaatggtggcgctgtttctgctgaagaatacccg                          >  2:539730‑M1/1‑40 (MQ=255)
                                                                                                                        atttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGGAATCATTCagtgggggagg                       <  2:35246‑M1/122‑4 (MQ=255)
                                                                                                                            cttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATg                   <  2:443379‑M1/126‑1 (MQ=255)
                                                                                                                                   ctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggc            >  1:593432‑M1/1‑26 (MQ=255)
                                                                                                                                    tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa           >  1:173391/1‑143 (MQ=255)
                                                                                                                                    ccgcaaaCCTGGGTTTGGGAGAGGGAGCAAAACGCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCaaaa           <  1:269441/139‑1 (MQ=255)
                                                                                                                                       aacacctTGGTTTGGGAGAAGGctctgcactacctgttggtggcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaagttcctc        <  2:36254‑M1/140‑122 (MQ=255)
                                                                                                                                       aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa        >  1:533157/1‑143 (MQ=255)
                                                                                                                                            cTTGTTCTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc   <  1:618375/143‑1 (MQ=255)
                                                                                                                                             ttGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacacggaactggccaaggcttatccgaca  >  1:183440‑M1/1‑16 (MQ=255)
                                                                                                                                             |                                                                                                                                              
TGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCC  >  NC_000913/1207649‑1207932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.