New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =19 (0.420)15 (0.380) 14/252 2.1 41.2% coding (290/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 1209619 = 26 (0.650)pseudogene (1/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

TCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA  >  NC_000913/1209478‑1209759
                                                                                                                                             |                                                                                                                                            
tCGGATAAGCCTTTGCCAGTTCCGTGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACg                                                                                                                                             <  2:495766/143‑1 (MQ=255)
    aTAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTa                                                                                                                                         <  1:192037/143‑1 (MQ=255)
        ggcgttGCCAGTTCCTGGTATTCGTCAGGCGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCTGAGTGGATGAAGGCCACGCCAGCCAGTCACCTACAGGTAATGCAGAGCCTTCTCCCAAACCAAGGttttcgag                                                                                                                                     <  2:767266/139‑6 (MQ=255)
          gttcgtcggTTCCGGGTGTTGTGCGGCAGAAGAAGCGGCTCCATGGCAGTGCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa                                                                                                                                   <  2:707008/135‑1 (MQ=255)
               cattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaag                                                                                                                              <  2:443379‑M2/17‑1 (MQ=255)
                cAGTTCCGGGTATGCTTCAGCAGAAAAATTGAAACGAGTGCATTGGAGACAGCCTGTTGGCGGAGTGGCCGAAGGCGACGTAACCGGTACAGCAGCTGGTAATGCAGAGCCTTCTCCCAAAGCAAGGtttgcgagagccgttc                                                                                                                             >  2:132761/1‑130 (MQ=255)
                   cctcccccactgaatgattcctgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAAt                                                                                                                          <  2:35246‑M2/21‑1 (MQ=255)
                      cccgcactgaatgattgctgattgctcaagaccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAAc                                                                                                                       <  2:383092‑M2/24‑1 (MQ=255)
                      cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACGGGTAAGGCAGAGCCTTCTCCCAAGACAACGCTTATGAAAATGAAGAAATaag                                                                                                                       >  2:251791/1‑142 (MQ=255)
                       gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTGGGCGGAGTGGCTGAAGGCCACGCAACCGGAACAGGAATTCTCACATTGGTGCCTCCTCCCCAACCAACGTGTATGAAAAAGAAGAAATcaca                                                                                                                      >  1:177653/1‑143 (MQ=255)
                       ccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGCAATAACa                                                                                                                      >  1:175981‑M2/119‑143 (MQ=255)
                             tgcatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCaaa                                                                                                                <  1:69606‑M2/31‑1 (MQ=255)
                               ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGTCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATg                                                                                                              >  2:94785/1‑143 (MQ=255)
                               ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCACAAACCAACGTTTATGAACATGAAGAAATAACAAGCAAATg                                                                                                              >  2:444924/1‑143 (MQ=255)
                               aatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAGGCAAATg                                                                                                              >  1:235211‑M2/111‑143 (MQ=255)
                                       aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCAGAGGGGCTGAAGGCCACGGAACCGGGACCCCAACAGGTACTGCAGACCCTTCTCCCAAACCAACGTTTATGAAAATGGAGAAATAACAAGCAAATGGCATCAtt                                                                                                      >  2:35015/1‑143 (MQ=255)
                                          aaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt                                                                                                   <  1:455297/143‑1 (MQ=255)
                                            gCGGCAGCATTGCACTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCACACCAACGTTTATGAAAATGAGGAAATAACAAGCAAATGGCATCATTCCTGc                                                                                                 <  2:547283/143‑1 (MQ=255)
                                               tcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt                                                                                              >  1:186020‑M2/95‑143 (MQ=255)
                                               gCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt                                                                                              >  1:227136/1‑143 (MQ=255)
                                                  ccATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCTACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAc                                                                                           <  2:700677/143‑1 (MQ=255)
                                                                ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCGAACCAACGGTTATGAAAGTGGGGAAAGAACCAGCGAATGGCATCATTCGTGCTTGTACCCGGGGGTTGTAAc                                                                             >  1:213047/1‑143 (MQ=255)
                                                                        tagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAt                                                                     >  1:345929‑M2/70‑143 (MQ=255)
                                                                           ctatgaagccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                                                  <  2:23285‑M2/77‑1 (MQ=255)
                                                                           ctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                                                  >  1:417690‑M2/67‑143 (MQ=255)
                                                                           ctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAGTTAACATGCTTATTgg                                                                  >  2:20449‑M2/67‑143 (MQ=255)
                                                                             ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAACTGAAGAAATAACACGCAAATGGCATCATTCCTGCTATTACAAGGGGGATTTAACATGCTTATTGGCt                                                                >  1:314418/1‑143 (MQ=255)
                                                                              tggTGGCTGAAGGCCACGGAACCGTGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAACATGAAGAAATAACAAGCAAATGTCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTa                                                               <  2:443790/141‑1 (MQ=255)
                                                                              ccgtggccttcagCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAGCCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTACACATGCTTATTGCCTa                                                               >  2:390932/13‑143 (MQ=255)
                                                                                        aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCCTCATTCCTACTTTTACAAGGGGGCACTAACATGCATATTGGCGATGTACCCGTa                                                     >  2:295943/1‑143 (MQ=255)
                                                                                            cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCACACCAACGTCTACGCCACTGAAGAAACAACAACCAACTGGCATCACTCCTGCTCTTACCAGGCGGATTTAACATGCTTATTCGCCATGTACGCGCATcaa                                                 >  2:752269/1‑143 (MQ=255)
                                                                                            cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaa                                                 >  1:530062/1‑143 (MQ=255)
                                                                                            cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAACAGGGGGATTTAAAATGACTAATGGACATGTAAGCGTATcaa                                                 >  2:38649/1‑143 (MQ=255)
                                                                                              cGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaaca                                               <  2:511127/143‑1 (MQ=255)
                                                                                                    agccgttgctgcatggagttttgctccgtctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTGCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc                                         <  2:129995‑M2/102‑1 (MQ=255)
                                                                                                         cacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa                                    <  2:449685/143‑1 (MQ=255)
                                                                                                            ctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTGTCAACAACTGACCAGCacac                                 >  2:368687‑M2/34‑143 (MQ=255)
                                                                                                                   tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATAATTCCTGCTTTTACCAGGGGGATTTAACACGCTTATTGGCTATGTCCGCGTATCAACAAATGACCAGAACACAGATCTa                          >  1:753581/1‑143 (MQ=255)
                                                                                                                   gagttctgctaattatcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGATGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTa                          <  2:738778‑M2/117‑1 (MQ=255)
                                                                                                                      ttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa                       >  1:606373‑M2/24‑143 (MQ=255)
                                                                                                                            gCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAt                 <  2:645632/143‑1 (MQ=255)
                                                                                                                             ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTAGGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAAGTACTg                >  2:191510‑M2/17‑143 (MQ=255)
                                                                                                                             ccTTCTCCCAAACCAACGTTTAAGAAAAAGAAGAAAAAACAATCATATGGCATCATTCCTGCTTTTACCAAGGATATGGAACGTACTGATTGGCGATGTACGCGTAGCAACAAATCACCAGAACACAAATCTACAACGTAATg                >  2:199312/1‑143 (MQ=255)
                                                                                                                                   cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAACAGAACACAGATCTACAACGTAATGCGCTGa          >  1:716670‑M2/11‑143 (MQ=255)
                                                                                                                                          caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTACCATGCTTATTGGCTATGTACGCGTACCAACAAATGACCAGAACACAGATCTACCACGTAATGCGCTGAACCGTGc   >  2:518558‑M2/4‑143 (MQ=255)
                                                                                                                                           aaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATGTAACATGCTCATTGGCTATGTACGCGGATCAACAAATGACCAGCACACAGATCTACAACGCGAtgcgctgaaaccagcc  >  2:437628‑M2/3‑136 (MQ=255)
                                                                                                                                             |                                                                                                                                            
TCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA  >  NC_000913/1209478‑1209759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.