New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4168410 =	40 (0.700)	8 (0.150)	4/272	6.9	17.3%	noncoding (40/76 nt)	gltT	tRNA‑Glu
	?	NC_000913	4209805 =	NA (NA)					noncoding (33/76 nt)	gltV	tRNA‑Glu
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCT  >  NC_000913/4209665‑4209876                                                                                                                                             |                                                                        ccTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTACCCTTCGTCTAGAGGCCCAGGACACCGCCCtt                                                                       >  1:931765/1‑143 (MQ=17)     tggttggttCACCTGTTTTACTTAAAGAAGCGTTCTTGGCACTGCTCACACAGATTGTCTTATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCAc                                                                   <  1:240273/142‑1 (MQ=11)      ggTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCAAGGACACCGCCCATTCAcg                                                                  >  2:147347/1‑143 (MQ=17)             tCACCTCCTTACCGTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGAAAGGAGACTTGCGAAGCAGACTGATACGTACCCTTAGTAGAGAGGCCCAGCAAAGAAACCATTCACGGCAGTaa                                                           >  1:385838/1‑143 (MQ=11)               aCCTCCTTACATTAAAGAAACGTTCTTTGCAGTACTCACACAGATTGACTGATAAAAAGTGAAAAGCAAGACGTCTTGCGAAGCAGACTGATAAGTCACATTCGTCTAAAGGACAAGAACACCGCCCGATCAcgacagccatc                                                         >  1:607068/1‑134 (MQ=11)                 ctcctTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGCAACAgg                                                       >  1:424519/1‑143 (MQ=17)                  tcctTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTATAGAGGCCCACGACACCGCCCTTTCACGGCGGTAACAggg                                                      >  2:673290/1‑143 (MQ=17)                    cttaccttaAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGt                                                    >  1:154444/1‑143 (MQ=32)                    ctgaccttaAAGAAGCGTTCTTTGCAGTGCTCACACAGGTTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGt                                                    <  1:180327/140‑1 (MQ=17)                      ttccttaAAGAAGCGTGCTTTGCCGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTc                                                  <  1:827236/141‑1 (MQ=12)                      gagctgaaaGGAGCGTTGGGTGCAGTGCGCACACGGAGTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCTCTTCGTCTGGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTc                                                  <  2:437444/137‑1 (MQ=11)                         cgtaAAGAAGCGTTCTTTGCTGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAATGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCTAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGaa                                               <  1:900232/141‑1 (MQ=12)                          ttaAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCATTCACGGCGGTAACAGGAGCTCGAAt                                              >  1:774040/1‑143 (MQ=12)                          ttaAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCATTTCACGGCGGTAACAGGGGTCCGAAt                                              >  1:191375/1‑143 (MQ=17)                           taAAGAAGCGTTCTGTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATc                                             <  2:52770/143‑1 (MQ=17)                              agaagCGTTCCTTACAGGGCTCACACAGATTGTCTGATAGAAAGTGAAACGCAAGGCGTCTTGCGAAGCAGACTGCTACGTCCCCTTCGTCTAGAGGCCTAGGATACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATcccc                                          <  1:402014/143‑1 (MQ=11)                                aagCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGGATCCCCTa                                        >  2:162703/1‑143 (MQ=17)                                aagCGTTCTTTGCAGTGCGCCCACAGATTGTGTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTa                                        <  1:237860/143‑1 (MQ=12)                                 cgCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTTAAATGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAg                                       <  2:736422/142‑1 (MQ=17)                                 agCGTTCTTGGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAAATCACTTTCCTTGCACGGCGGTAACAGGGGTTCGAATCCCCTAg                                       <  2:944543/143‑1 (MQ=11)                                  gCGTTCTTTGCAGTGCTCACACAGATTGTCTGCTAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTACCGGCGGTAACACGGGTTCGAATCCCCCAgg                                      >  1:517425/1‑143 (MQ=11)                                      tCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGAc                                  >  1:963473/1‑143 (MQ=32)                                       cTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCCAGAGGCCCAGGACACCGCCCTTTCCCGCCGGTACCCGGGGTTCCAATCCCCtccgggccg                                 >  1:102045/1‑135 (MQ=11)                                        tttGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGGTCGAATCCCCTAGGGGACGc                                >  2:833129/1‑143 (MQ=17)                                           gCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGAGACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCAc                             <  2:35835/143‑1 (MQ=17)                                           gCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCAc                             >  2:757962/1‑143 (MQ=32)                                             aGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACtt                           >  2:848422/1‑143 (MQ=32)                                                  tCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGATCGAATCCCCTAGGGGACGCCACGTGCCgg                      >  1:586908/1‑143 (MQ=12)                                                    acacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGTGACGCCACTTGCTGGtt                    >  2:389951/1‑143 (MQ=17)                                                     cacaGGTTGTCTGACAGACAGTGAAAGGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGttt                   <  1:561568/143‑1 (MQ=255)                                                     cacaGATTGTCTGATAGAAAGTGAAAAGCGAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTATAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGttt                   <  2:297692/143‑1 (MQ=17)                                                     cacaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGttt                   >  1:863653/1‑143 (MQ=32)                                                      acaGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTtg                  >  1:364757/1‑143 (MQ=32)                                                         gcttcgcTGATAGAAAGTGAAAATCAAGGCGGCTTGCGCCGCCGACTTACACGTCCCCTTCGTCTAGAGGCCCACGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTgtga               <  2:981459/137‑1 (MQ=11)                                                         gactgcccgcgaaaaaGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTgtga               <  2:612056/130‑1 (MQ=2)                                                         gATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTgtga               >  2:867409/1‑143 (MQ=32)                                                         gATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTgtga               >  2:487377/1‑143 (MQ=32)                                                           ttGTCTGATTGAGAGTCAAAAGCAAGGCGTCTTGCGCAGCAGACTGATCCGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTgtgagt             <  1:606503/143‑1 (MQ=11)                                                              tCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGaa          <  2:938638/143‑1 (MQ=32)                                                                tGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAg        >  1:654818/1‑143 (MQ=32)                                                                 gATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAACCCCCTAGGGGACGCCACTTGCTGGTTCGCGAGGGAAAGt       >  1:664158/1‑143 (MQ=255)                                                                  gtAGAAAGTGAAAAGCCAGGCGTCTTGCGAAGCAGACTGATACGTCCCATTAGTCTAGAGTCTCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTc      <  1:592951/142‑1 (MQ=11)                                                                   tAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCa     <  2:918157/143‑1 (MQ=32)                                                                    aGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCAGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGGTTGTGAGTGAAAGCCAc    >  1:484864/1‑143 (MQ=12)                                                                     gAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCAcc   >  2:67870/1‑143 (MQ=31)                                                                      aaaGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCt  >  1:815516/1‑143 (MQ=11)                                                                                                                                             |                                                                        CCTGCGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTGATAGAAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCT  >  NC_000913/4209665‑4209876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.