New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 229120548 (1.240)3 (0.080) 3/270 5.3 6.5% noncoding (55/199 nt) RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site
?NC_000913 = 2549481 40 (1.090)noncoding (18/98 nt) RIP176 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site RIP176 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2291057‑2291205
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCAGCACTCTCAGACCAGCCAGTAACATTACTGACTGGCCTTTTTATTACTTCTGCTTTAACGCCGCATACACCTGATCAACTACCCAACCATAAGTTGCAATCGGCAACT  <  NC_000913/2549481‑2549340
                                                                                                                                                                                                                                                                                                   
tagATATTGGCAGTCTGCTGCGTAGTCTCGATGTCTGGTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTG                                                                                                                                                      <  1:302422/140‑1
                       AAACTCAATGCCCGCCCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATAAGCGTAGCGCATCAGG                                                                                                                               <  2:171200/143‑1
                                   CGCCCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTT                                                                                                                   <  2:286525/143‑1
                                       CACGAGTGGCGGCCACCATTCGGGGCCAGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTC                                                                                                               <  2:24299/143‑1
                                                                                                                                                 TGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCAGCACTCTCAGACCAGCCAGTAACATTACTGACTGGCCTTTTTATTACTTCTGCTTTAACGCCGCATACACCTGATCAACTACCCAACCATAAGTTGCAATCGGCA     >  1:561805/1‑143
                                                                                                                                                 TGATAAGCGTAGCGCATCAGGCAGTTTTGCGGTTGGCAGCACTCTCAGACCAGCCAGTAAAGTTACTGACTGGCCTTTTTATTACTTCTGCTGTAACGCCGCATACACCTGATCAACTCCCCAACCCTAAGTTGCAcagggca     >  1:589569/1‑136
                                                                                                                                                  GATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCAGCACGCTCAGACCAGCCAGTAACATTACTGACTGGCCTTTTTATTACTTCTGCTTTAACGCCGCATACACCTGATCAACTACCCAACCATAAGTTGCAATCGGCAA    <  2:340097/143‑1
                                                                                                                                                    TAAGCGCAGCGCCTCAGGCAGTTTTGCGTTTGTCAGCACTCTCAGACCAGCCAGTAACATTACTGACTGGCCTTTTTATTACTTCTGCTTTAACGCCGCATACACCTGATCAACTACCCAACCATAAGTTGCAATCGGCAACT  <  2:158020/143‑1
                                                                                                                                                                                                                                                                                                   
TACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2291057‑2291205
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCAGCACTCTCAGACCAGCCAGTAACATTACTGACTGGCCTTTTTATTACTTCTGCTTTAACGCCGCATACACCTGATCAACTACCCAACCATAAGTTGCAATCGGCAACT  <  NC_000913/2549481‑2549340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.