New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2291205	48 (1.240)	3 (0.080)	3/270	5.3	6.5%	noncoding (55/199 nt)	RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site	RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site
	?	NC_000913	= 2549481	40 (1.090)					noncoding (18/98 nt)	RIP176 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site	RIP176 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2291057‑2291205 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCAGCACTCTCAGACCAGCCAGTAACATTACTGACTGGCCTTTTTATTACTTCTGCTTTAACGCCGCATACACCTGATCAACTACCCAACCATAAGTTGCAATCGGCAACT  <  NC_000913/2549481‑2549340                                                                                                                                                                                                                                                                                                     tagATATTGGCAGTCTGCTGCGTAGTCTCGATGTCTGGTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTG                                                                                                                                                      <  1:302422/140‑1                        AAACTCAATGCCCGCCCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATAAGCGTAGCGCATCAGG                                                                                                                               <  2:171200/143‑1                                    CGCCCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTT                                                                                                                   <  2:286525/143‑1                                        CACGAGTGGCGGCCACCATTCGGGGCCAGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTC                                                                                                               <  2:24299/143‑1                                                                                                                                                  TGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCAGCACTCTCAGACCAGCCAGTAACATTACTGACTGGCCTTTTTATTACTTCTGCTTTAACGCCGCATACACCTGATCAACTACCCAACCATAAGTTGCAATCGGCA     >  1:561805/1‑143                                                                                                                                                  TGATAAGCGTAGCGCATCAGGCAGTTTTGCGGTTGGCAGCACTCTCAGACCAGCCAGTAAAGTTACTGACTGGCCTTTTTATTACTTCTGCTGTAACGCCGCATACACCTGATCAACTCCCCAACCCTAAGTTGCAcagggca     >  1:589569/1‑136                                                                                                                                                   GATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCAGCACGCTCAGACCAGCCAGTAACATTACTGACTGGCCTTTTTATTACTTCTGCTTTAACGCCGCATACACCTGATCAACTACCCAACCATAAGTTGCAATCGGCAA    <  2:340097/143‑1                                                                                                                                                     TAAGCGCAGCGCCTCAGGCAGTTTTGCGTTTGTCAGCACTCTCAGACCAGCCAGTAACATTACTGACTGGCCTTTTTATTACTTCTGCTTTAACGCCGCATACACCTGATCAACTACCCAACCATAAGTTGCAATCGGCAACT  <  2:158020/143‑1                                                                                                                                                                                                                                                                                                     TACATATTCGCAATCTGCTGCGTAAACTCAATGTCCGCTCACGCGTGGCGGCCACCATTCTGTTCCTGCAACAACGCGGGGCACAATAAAAATAGCCCGATGGATTTATCATCGGGCTGAGATTTATGACAAACGCAAAACTGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2291057‑2291205 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCAGCACTCTCAGACCAGCCAGTAACATTACTGACTGGCCTTTTTATTACTTCTGCTTTAACGCCGCATACACCTGATCAACTACCCAACCATAAGTTGCAATCGGCAACT  <  NC_000913/2549481‑2549340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.