New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2291205	48 (1.240)	3 (0.080)	3/270	5.3	6.5%	noncoding (55/199 nt)	RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site	RIP160 (repetitive extragenic palindromic) element, contains 4 REP sequences and 1 IHF site
	?	NC_000913	= 2549481	40 (1.090)					noncoding (18/98 nt)	RIP176 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site	RIP176 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGTTGCCGATTGCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTT  >  NC_000913/2549339‑2549622                                                                                                                                               |                                                                                                                                              cAGTTGCCGATTGCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCtt                                                                                                                                               <  2:373439/143‑1 (MQ=255)  aGTTGCCGATTGCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGAGGCGCTGCGCTTa                                                                                                                                              >  2:158020/1‑143 (MQ=255)    ttGCCGATTGCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGCGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATc                                                                                                                                            >  2:340097/1‑143 (MQ=255)     tgccctgtGCAACTTAGGGTTGGGGAGTTGATCAGGTGTATGCGGCGTTACAGCAGAAGTAATAAAAAGGCCAGTCAGTAACTTTACTGGCTGGTCTGAGAGTGCTGCCAACCGCAAAACTGCCTGATGCGCTACGCTTATCa                                                                                                                                           <  1:589569/136‑1 (MQ=38)     tGCCGATTGCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCa                                                                                                                                           <  1:561805/143‑1 (MQ=255)               aaCTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTg                                                                                                                                 >  1:674181/1‑143 (MQ=255)                aCTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg                                                                                                                                >  2:240273/1‑143 (MQ=255)                  ttATGATTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAg                                                                                                                              >  1:559504/1‑143 (MQ=255)                       gTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACCTGGAGCCcac                                                                                                                         >  1:151074/1‑143 (MQ=255)                           tgTAGTTGATAGGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCAAGTCAGTAATGTTACGGGCTGGTCTGAGAGGGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAata                                                                                                                     <  2:439793/142‑1 (MQ=38)                               gTTGAGCAGGTGTATGCGGCGTGAAAGCGTAAGTAAGAAAAAGGCCAGTCAGTAATGTTGCTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATAtt                                                                                                                 <  1:531827/143‑1 (MQ=37)                                  gATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGaa                                                                                                              >  2:199811/1‑143 (MQ=255)                                   aTCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAAt                                                                                                             >  2:315029/1‑143 (MQ=255)                                    tCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATACTGaact                                                                                                            >  1:114664/1‑141 (MQ=255)                                     cAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAGTATATTGAATTa                                                                                                           >  2:144968/1‑143 (MQ=255)                                        gtgtATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAACATATTGAATTAGCa                                                                                                        >  2:158378/1‑143 (MQ=255)                                        gggtATGGGGCGGTGAAGCAGAAGGAGTAAAAAGGCCAGTCAGGAATGTTACTGGCTGGGCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCa                                                                                                        <  2:18270/141‑1 (MQ=25)                                             tGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCCCGCtt                                                                                                   >  2:184732/1‑143 (MQ=255)                                              gcggcgTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTCCTGGCTGCACTGAGGTGGCTGATAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGAttt                                                                                                  >  2:671060/1‑143 (MQ=37)                                              gcggcgTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCAAAATATATTGAATTAGCACGAttg                                                                                                  >  1:414102/1‑142 (MQ=255)                                                ggcgTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATTTCTTGAATTAGCACGATTTCg                                                                                                >  2:618015/1‑143 (MQ=255)                                                      aaaGCAGAAGTAATAAGAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGcc                                                                                          <  2:461098/143‑1 (MQ=255)                                                         gCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGTAGACAAACGCAAAACCACCCTATGCGCTACGCTTATCAGGCCTACGTGGAGCCCCCAATATATTGAATTAGCCCGATTTCGTAGGACgaa                                                                                       >  1:406123/1‑141 (MQ=37)                                                                    aaaaaGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGAGCTGACAAACGCAAAACTGCCTGAACAGCTACGCTTATCAGCCCTACGCGGAGCCCACAACATATTGAATTAGCACAATATCGTAGGCAGGATAAGGCGTACa                                                                            >  1:441785/1‑143 (MQ=25)                                                                     aaaaGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCGGGGTacgccacacac                                                                           >  1:315008/1‑133 (MQ=25)                                                                      aaaGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCAcg                                                                          >  1:548742/1‑143 (MQ=255)                                                                            ccgtcggtAATGTTACTGGCTGGCCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATGCGGCGTGAAcgccttat                                                                    <  1:144936/141‑5 (MQ=21)                                                                                 agtAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGCATAAGGCGTCCACGCCGCCTCCGGc                                                               >  2:137778/1‑143 (MQ=255)                                                                                     aTGGTACTGGCTTGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCgtgt                                                           <  1:492551/143‑1 (MQ=255)                                                                                              gctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATACGGCGTTCACGCCCCATCCGGCgtgtcgcacgagc                                                  >  2:620682/1‑134 (MQ=21)                                                                                                     tGAGAGTGCTGACACACGCAAAACTGCCTGATGCGCTACGCTTATCCGGCCTACGTGGAGCCCACAATATACTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGt                                           <  2:406775/143‑1 (MQ=255)                                                                                                      gagaGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACTTGGAGCCCACAATATATTGAATTAGCCCGATTCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTc                                          <  1:619902/143‑1 (MQ=255)                                                                                                       agagTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGAca                                         >  1:118867/1‑143 (MQ=255)                                                                                                        gagTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTcaa                                        <  1:199811/143‑1 (MQ=255)                                                                                                            gCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATAGATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAAt                                    >  2:343861/1‑143 (MQ=255)                                                                                                                agagaCGCAAAACGGCCTGATGCGGTACGCTTATCAGGCCTACGTGGAGCCCACAATAGATTGAATTAGCACGATGTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGa                                <  1:121781/139‑1 (MQ=21)                                                                                                                  aaccGCAAAACTGCCGGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGATTTAGCATGATTTCGTAGGGCGGATAAGGCGTTCACGCCGCAGCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAgg                              <  2:188263/140‑1 (MQ=21)                                                                                                                  aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAgg                              >  2:256633/1‑143 (MQ=255)                                                                                                                       cAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCcagt                         >  2:83480/1‑143 (MQ=255)                                                                                                                       cAAAACTGCCTGAGTCGCTACGCTTATCGGGCCTACGTGGAGCCCACAATATGTTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCcagt                         <  1:484452/143‑1 (MQ=255)                                                                                                                                 tGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCATGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGtt               <  1:240273/143‑1 (MQ=255)                                                                                                                                      cgctgcgctgAACAACCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGc          <  1:315029/143‑1 (MQ=37)                                                                                                                                         tACGCGTATGAGGCCTGCGTGGGGCCAAAAAGAGATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTg       <  1:230562/143‑1 (MQ=25)                                                                                                                                              ttATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCtt  >  2:401810/1‑143 (MQ=255)                                                                                                                                              ttATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGGTACTGCATGGCCtt  >  1:156700/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                              CAGTTGCCGATTGCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTT  >  NC_000913/2549339‑2549622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.