New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12994982 (0.030)89 (1.210) 70/274 0.0 98.9% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

CAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT  >  NC_000913/1299362‑1299640
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cAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataata                                                                                                                                          >  2:954867‑M1/1‑137 (MQ=255)
         ataAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgt                                                                                                                                 >  1:811135‑M1/1‑128 (MQ=255)
          taAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCCCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgtt                                                                                                                                >  2:838986‑M1/1‑127 (MQ=255)
            aGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGACACATCATAATCCTGCGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTACCTTTGGTAGAGGAAAGTGCTAAataacaatcaattgttaa                                                                                                                              >  2:50819‑M1/1‑125 (MQ=255)
             tgaTTTCCTTAACTGCTTCTCATGATCATCAGGTTATTTTCTCCACATCATAATACTGGGCTTGTGGAAGAACAATTGAAATGATATTATTAATTCCACTGCCGTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaa                                                                                                                             <  2:640190‑M1/142‑20 (MQ=255)
              gATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaat                                                                                                                            >  1:651717‑M1/1‑123 (MQ=255)
              gATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGATAAataataatcaattgttaaat                                                                                                                            >  1:135208‑M1/1‑123 (MQ=255)
              gATTTCCTTAACTGATTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTAGCTGAAGAATAATTGAAATGATATTATTAATTGCACTGCCTCCGGTAGAGGAAAGTGGTAAaaaatcaccactcgttaaat                                                                                                                            >  2:569324‑M1/1‑123 (MQ=255)
                 ttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattat                                                                                                                         >  2:1123811‑M1/1‑120 (MQ=255)
                   ccTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattg                                                                                                                       <  2:827166‑M1/143‑26 (MQ=255)
                        aCTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcat                                                                                                                  >  1:91463‑M1/1‑113 (MQ=255)
                          tGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGTCTTGCTGAAGAATAATTGACATGATATTATTAGTTCCAGCCGGGTTTGTAGAGGAAAGTGCTAAataataagcaattgttaaattattgtgcattt                                                                                                                <  2:586425‑M1/143‑33 (MQ=255)
                           gCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcattta                                                                                                               >  2:900566‑M1/1‑110 (MQ=255)
                               ctcctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcacta                                                                                                           >  1:1039112‑M1/1‑106 (MQ=255)
                                 cctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaatcgttaaattattgtgcatttcactact                                                                                                         >  1:754605‑M1/1‑104 (MQ=255)
                                  ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactg                                                                                                        <  1:243036‑M1/143‑41 (MQ=255)
                                   tcACCATCATGTTATTTTCGCCACATCATCATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcacttgttcaattattgtgcatttcattactgg                                                                                                       >  2:517104‑M1/1‑102 (MQ=255)
                                   tcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatttttgtgcatttcactactgg                                                                                                       >  1:816488‑M1/1‑102 (MQ=255)
                                     cccactatgttattTTCGCCACATCATAATCCTGGGCTTGCTGAANAATAATGGAAATGATATTATTAAGTCCTCNGCCTTTGGTAGAGGAAAGNGCTAAanaataatnaattgttaaattattgtgcatttcactactggaa                                                                                                     <  2:889898‑M1/137‑44 (MQ=255)
                                     aCCATCTTGTTATGTTCGTCACATCATAATCCTGGTCGTGCTGAAGAATAAGTGAAATGATATTATTGATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaa                                                                                                     <  2:990005‑M1/143‑44 (MQ=255)
                                      ccctcatgttATTTTCACCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACAGCCGTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaac                                                                                                    <  1:779359‑M1/140‑45 (MQ=255)
                                       catcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaacttattgtgcatttcactactggaact                                                                                                   >  2:1039876‑M1/1‑98 (MQ=255)
                                       catcatGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCCAAataataatcaattgttaaattattgtgcatttcactactggaact                                                                                                   <  1:1259394‑M1/143‑46 (MQ=255)
                                          catGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgta                                                                                                <  2:104142‑M1/143‑49 (MQ=255)
                                           atGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATTATATGATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaa                                                                                               <  1:958907‑M1/143‑50 (MQ=255)
                                            tGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaat                                                                                              >  2:630206‑M1/1‑93 (MQ=255)
                                            tGTTATTTTAGCAACATCAAAATCATGGGCTTGCATAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaat                                                                                              <  1:69231‑M1/143‑51 (MQ=255)
                                             ggtatTTTCGCCACATCATAATCCTGGGCTTGCCGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatc                                                                                             <  1:808992‑M1/141‑52 (MQ=255)
                                              ttATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatca                                                                                            >  2:52202‑M1/1‑91 (MQ=255)
                                                aTTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcaga                                                                                          >  1:860581‑M1/1‑89 (MQ=255)
                                                 ttttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa                                                                                         <  1:32147‑M1/143‑56 (MQ=255)
                                                 ttttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa                                                                                         <  1:1103935‑M1/143‑56 (MQ=255)
                                                 ttttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa                                                                                         >  2:1302287‑M1/1‑88 (MQ=255)
                                                   ttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaa                                                                                       >  1:504036‑M1/1‑86 (MQ=255)
                                                       ccACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagata                                                                                   >  1:647758‑M1/1‑82 (MQ=255)
                                                        cacaTCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGTCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatag                                                                                  <  2:546546‑M1/143‑63 (MQ=255)
                                                        cacaTCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGATGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatag                                                                                  <  2:487715‑M1/143‑63 (MQ=255)
                                                         acgtcataatCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagctaga                                                                                 >  1:518166‑M1/4‑80 (MQ=255)
                                                          catcatAATTCTGGTGTTGTTGAAGAATAATTGTAATGATATTATTAATTCCACTGCCGTTGGTAGAGGAAAGGGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagac                                                                                <  1:995000‑M1/143‑65 (MQ=255)
                                                               tAATCCGGGGCGTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgct                                                                           <  2:414625‑M1/143‑70 (MQ=255)
                                                                aaTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtcatcagaaaagatagacatgctt                                                                          >  2:295467‑M1/1‑73 (MQ=255)
                                                                 aTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctta                                                                         <  1:279173‑M1/143‑72 (MQ=255)
                                                                 aTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctta                                                                         <  2:816488‑M1/143‑72 (MQ=255)
                                                                   ccTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtactctgagaagatagacatgcttaca                                                                       >  1:1237423‑M1/1‑70 (MQ=255)
                                                                     tGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaatgataaacatgcttaccca                                                                     >  2:1183592‑M1/1‑68 (MQ=255)
                                                                     tGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagcca                                                                     >  1:995383‑M1/1‑68 (MQ=255)
                                                                      gggCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTCAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaa                                                                    >  2:587030‑M1/1‑67 (MQ=255)
                                                                       ggCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaat                                                                   <  2:724450‑M1/143‑78 (MQ=255)
                                                                        gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaac                                                                                                    <  1:1058704‑M1/109‑45 (MQ=255)
                                                                        gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaac                                                                                                    >  2:1058704‑M1/1‑65 (MQ=255)
                                                                         cTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatct                                                                 >  1:1051215‑M1/1‑64 (MQ=255)
                                                                         cTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatct                                                                 >  1:225980‑M1/1‑64 (MQ=255)
                                                                               gaagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctattt                                                           <  2:605645‑M1/143‑86 (MQ=255)
                                                                                aagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttg                                                          >  2:583358‑M1/1‑57 (MQ=255)
                                                                                 agaaTAATTGAAATGATATTATTAATTCCACTTCCTTTGGTAGAGGAAAGTGCTAAatcataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttga                                                         <  1:838986‑M1/143‑88 (MQ=255)
                                                                                   aataatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgatt                                                       >  1:689370‑M1/1‑54 (MQ=255)
                                                                                     taatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattga                                                     <  1:1135061‑M1/143‑92 (MQ=255)
                                                                                     taatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattga                                                     >  2:372455‑M1/1‑52 (MQ=255)
                                                                                      aatTGCAATGATATTATTAATTCCACTGCGTTTGGTAGAGGAAAGTGCTATatcataatcaattgttaaattattgtgcggttcactactggaactgtaatcagaaaagatagtcatgcttagccaatctctatttgagtgaa                                                    <  2:88755‑M1/143‑93 (MQ=255)
                                                                                      aagtggagtgatattatTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaa                                                    <  2:1198274‑M1/135‑93 (MQ=255)
                                                                                       atTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaat                                                   >  2:523583‑M1/1‑50 (MQ=255)
                                                                                        ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaat                                                   >  2:946755‑M1/1‑49 (MQ=255)
                                                                                        ttGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaat                                                   <  1:946755‑M1/142‑94 (MQ=255)
                                                                                           aaaaGATATTATTAATTCCCCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaa                                               <  2:725599‑M1/143‑98 (MQ=255)
                                                                                           aaaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaa                                               <  2:1124887‑M1/143‑98 (MQ=255)
                                                                                                ctatgattAATTCCACTGCGTGTGGTAGAGGAAAGTGCTAAataataaacaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatg                                          <  2:212175‑M1/142‑103 (MQ=255)
                                                                                                   ttattaATTGCTCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgttt                                       <  1:109210‑M1/143‑106 (MQ=255)
                                                                                                     attaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagccatgcttagccaatctctatttgcttgaattgaaagatgtttgt                                     >  2:187172‑M1/1‑36 (MQ=255)
                                                                                                     attaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctattagcttgaagggaaagatgtttgt                                     >  1:235104‑M1/1‑36 (MQ=255)
                                                                                                       taATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgtta                                   >  2:973961‑M1/1‑34 (MQ=255)
                                                                                                       taATTCCACTGCCTTTGGGTGAGGCAACTGCAAActatctatctgatggtaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgtta                                   <  1:954867‑M1/143‑110 (MQ=255)
                                                                                                        aaTTCCATTGCCGTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcagttcactactggaactgtaatcagaaaagatagacatgcttagccaatctcaaagtcattgaattgaaagatgtttgttaa                                  <  2:162215‑M1/143‑111 (MQ=255)
                                                                                                         aTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaag                                 >  1:313916‑M1/1‑32 (MQ=255)
                                                                                                          ttCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaagg                                <  1:475733‑M1/143‑113 (MQ=255)
                                                                                                             cACTGTCTTTGCCAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactgtaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcat                             <  1:1119224‑M1/143‑116 (MQ=255)
                                                                                                             cACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcat                             <  1:372455‑M1/143‑116 (MQ=255)
                                                                                                                cTGTCTTTGGTAGTGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatgg                           <  1:255681‑M1/143‑118 (MQ=255)
                                                                                                                cTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatgg                           <  1:491356‑M1/143‑118 (MQ=255)
                                                                                                                   ccTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatg                        >  1:991382‑M1/1‑23 (MQ=255)
                                                                                                                   ccTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactcgaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatg                        >  2:232729‑M1/1‑23 (MQ=255)
                                                                                                                      ttGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgacttgaaagatgtttgttaaggcatggatgcaa                     >  1:493529‑M1/1‑20 (MQ=255)
                                                                                                                      ttGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaa                     >  2:36463‑M1/1‑20 (MQ=255)
                                                                                                                       aacctggtggagctGCCAACGAAGGTGCTAACAAGCGCCTAATCGGAGAACATGTTGGTCAGCTGAACCCATAGAACAGGGTTCATTATTAGTCATCACCTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGAc                    <  2:641825/130‑1 (MQ=2)
                                                                                                                        ggTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgcttgaattgaatgacgtttgttaagccctggatgcaagc                   >  1:160080‑M1/1‑18 (MQ=255)
                                                                                                                        ggTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagc                   >  2:752523‑M1/1‑18 (MQ=255)
                                                                                                                        ggTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaacagtaatcagtaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagc                   <  1:664687‑M1/143‑126 (MQ=255)
                                                                                                                            gagGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctata               <  1:112856‑M1/143‑130 (MQ=255)
                                                                                                                            gagGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctata               >  2:176689‑M1/1‑14 (MQ=255)
                                                                                                                               gattttGCTAAGGAAGGAGCGAACAAGCCCCCGTGAGGACAGCGTGTTTGTCATCTGGAGCCATAGAACAGGAATCATAATGAGTCCTCAACTTACCTTCGCCGAGCGTGAATACAGCAGTAAGCACCGGCAGACCAGaaaac            >  2:1292243/6‑142 (MQ=2)
                                                                                                                                aaaGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgttatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagatt           <  1:609344‑M1/143‑134 (MQ=255)
                                                                                                                                   gTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctg        <  1:52202‑M1/143‑137 (MQ=255)
                                                                                                                                     ggtaaataatagtcaattgttaaattataatgcgtgtgactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgat      <  1:1241616‑M1/141‑139 (MQ=255)
                                                                                                                                       tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatac    >  1:1227031‑M1/1‑3 (MQ=255)
                                                                                                                                       tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatac    >  1:247065‑M1/1‑3 (MQ=255)
                                                                                                                                       tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctataaattctgatac    >  2:655849‑M1/1‑3 (MQ=255)
                                                                                                                                         aataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatacaagctatagattctgatacgg  >  2:677173‑M1/1‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                              
CAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT  >  NC_000913/1299362‑1299640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.