| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258675 | NA (NA) | 53 (0.970) | 42/284 | 0.2 | 100% | intergenic (+776/‑1) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 1303476 = | 0 (0.000) | coding (578/921 nt) | oppB | oligopeptide ABC transporter permease | |||||
CGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/258535‑258675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCC > NC_000913/1303476‑1303612 CGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAACACACCATCATACACTAAATCAGTAAGTTGGCAGCATCCCCCC > 1:420989/1‑143 TCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCCGCATCACCCCCGTGGCTC > 2:431704/1‑143 CGGCGGTGCTTTTGCCGTTACGCACCACACAACCGCAACCCGAGCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTA < 2:397157/143‑1 GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGCTAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTCCCTCTct > 2:332938/1‑141 GTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATT > 2:382571/1‑143 ctctgGCCGTGACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCGCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAA < 2:419479/138‑1 CTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAA < 1:180431/143‑1 CTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAA < 2:62211/143‑1 TTTTGCCGTTACGCACCACACCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCAACTGGGGCACGTCAAAAACACCATCATACACTAAATCAGCAAGTCGGCAGCATCACCCCCGCGGCGCTCTAGTTGAAG > 1:941847/1‑143 ccgacaagacgCACCCCGTCAGGAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTA < 1:146827/132‑1 CCGTTACGCACCACCCCGTCAGCAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTA < 2:162605/143‑1 CCGGTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTA < 1:362222/143‑1 GCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACGCGCCA > 2:731505/1‑143 GCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCAACTCAAAACCACCATCATACACTAAATCAGTAAGTTGGAAGTATCACCCACGTGGCGACATGAGTGAAGTATTACAATCaa > 1:329188/1‑141 CACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAA < 1:218444/143‑1 CCGTCAGTGGCTGAACAGGAGGGACAGCTGATAGAAACAGCAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATT < 1:255076/143‑1 GCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAGCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCC > 2:163843/1‑143 CTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTACATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCC > 1:177781/1‑143 CTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCC > 2:367183/1‑143 AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGCGCACCTCAAAAACACCATCATACACTAAATCCGTAAGTTGCCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGG < 2:727694/143‑1 GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAGGTATTACACTCCAGTTTTATTCGTACTGCCCGGGCGCAA > 2:185786/1‑143 tggcCAGCTGATAGATCCACAGGCCACTGGAGCTCCTCAAAAACACCATCATACACTAAATCATTAAGTTGCCAGTATCATCTCTGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGG < 1:381540/139‑1 GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGACAGGG > 1:560095/1‑143 GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTATTAAAGAAAATTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGG > 2:903395/1‑143 CTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCT > 2:95130/1‑143 ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGACGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTAACTGTG > 2:186250/1‑143 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCACTCTGACTGAAGTATTACACTCCAATTCTAGTCGTACTGCCCGGGCGAAAGGGTAACCTATGCa > 1:137295/1‑142 AACAGATGCCACTGGAGCACCTCAAAATCACCATCATACACTAGATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGCAGTATTACTCTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCG < 1:930181/143‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCG > 1:654050/1‑143 CAGAAGCCACTGGAGCTCCTCAAAAACACCATCATACACTGAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGA < 1:892545/143‑1 CTGGAGCACCTCAAAGACGCCATCATACACTAAAGCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTAC < 2:571376/143‑1 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCGCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTACCCCGGCGAACGGGGTACCTATGCGGCAGAcacatcgacg > 1:897898/1‑133 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCA > 2:195930/1‑143 CACCTCAAAACCACCAGCATACACTAACTCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACG < 2:47701/143‑1 atcgcgagtgctgCATCATACACGTAATCATTATGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAGGTATTACTCTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGC < 1:363545/130‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCAT > 2:185034/1‑143 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTCCCTATGCGGCGGATCATTTTACGTCACGCATT > 2:597093/1‑143 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACCCTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGAGGATCATTTTGCGACACGTATTAca > 1:53073/1‑141 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAc > 2:257174/1‑142 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAAC < 2:558014/143‑1 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATGTTACGTCACGCATTAAAACCT > 2:515535/1‑143 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATCTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCT > 1:428334/1‑143 TCATACACTTTATCAGTAAGTTGGCAGCATCACCCCCGTGGCTTGATGATTGAAGTATTACACTCCAATTTTAGTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCT < 2:835285/143‑1 cgCTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTAC < 2:268352/141‑1 ACTAAATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACC < 2:648419/143‑1 AAATCTGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGT < 2:331515/143‑1 AATCAGTAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTG > 1:487032/1‑143 TCAGTAAGTTGGACGCATCAGTCACGGTGCTCTATGATGGAAGTATTACACTTCAATTTTAGTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGGTCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCT < 1:522516/143‑1 TAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCT < 2:238280/143‑1 TAAGTTGGCAGCATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTCTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTCCCCGTGCTCTCT > 2:88641/1‑143 gAGTTGGCAGCAGCACCCCCGTGGCGCTATGGTGGAAGTATGACACTCCAAGTTTAGTCGGACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTT < 1:895969/142‑1 AAGTTGGCAGCATCACCCCCGTGGCTCTATGATTTAAGTATTACATTCCAATTTTCTTTGGACTGTCCGGGTGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGTTCTGTTACCCGTGCTCTCTT < 1:332938/143‑1 ATCACCCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTCATATGGGCCCC > 1:687729/1‑143 CGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/258535‑258675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCC > NC_000913/1303476‑1303612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |