| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258675 | NA (NA) | 53 (0.970) | 42/284 | 0.2 | 100% | intergenic (+776/‑1) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 1303476 = | 0 (0.000) | coding (578/921 nt) | oppB | oligopeptide ABC transporter permease | |||||
TTGCACCATTATTAGTCATGATATTTGCGATCATTTTGCATTGGCTGCCGGGCGGTGGCTGGAATGGTGGGGCGCTTAAATTCATGATATTGCCGATGGTGGCGTTGTCACTCGCTTATATCGCCAGTATTGCGCGTATTACCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCC > NC_000913/1303335‑1303612 | cgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaacacaccatcatacactaaatcagtaagttggcagcatcccccc > 1:420989‑M2/142‑143 (MQ=255) tccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggccgcatcaccCCCGTGGctc > 2:431704‑M2/134‑143 (MQ=255) cggcggtgcttttgccgttacgcaccacacaaccgcaacccgagcaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTa < 2:397157‑M2/12‑1 (MQ=255) ggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgctagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTccctctct > 2:332938‑M2/131‑141 (MQ=255) gtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGAtt > 2:382571‑M2/127‑143 (MQ=255) cttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGaa < 1:180431‑M2/20‑1 (MQ=255) cttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGaa < 2:62211‑M2/20‑1 (MQ=255) ctctggccgtgacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcaccgcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGaa < 2:419479‑M2/20‑1 (MQ=255) ttttgccgttacgcaccacaccgtcagtagctgaacaggagggacagctgatagaaacagaagcaactggggcacgtcaaaaacaccatcatacactaaatcagcaagtcggcagcatcaccCCCGCGGCGCTCTAGTTGAAg > 1:941847‑M2/123‑143 (MQ=255) ccgttacgcaccaccccgtcagcagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTa < 2:162605‑M2/26‑1 (MQ=255) ccggtacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTa < 1:362222‑M2/26‑1 (MQ=255) ccgacaagacgcaccccgtcaggagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTa < 1:146827‑M2/26‑1 (MQ=255) gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACGCGCCa > 2:731505‑M2/111‑143 (MQ=255) gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcaactcaaaaccaccatcatacactaaatcagtaagttggaagtatcaccCACGTGGCGACATGAGTGAAGTATTACAatcaa > 1:329188‑M2/111‑141 (MQ=255) caccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCaa < 1:218444‑M2/34‑1 (MQ=255) ccgtcagtggctgaacaggagggacagctgatagaaacagcagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTAtt < 1:255076‑M2/41‑1 (MQ=255) gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaagcaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGcc > 2:163843‑M2/94‑143 (MQ=255) ctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactacatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGccc > 1:177781‑M2/93‑143 (MQ=255) ctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGccc > 2:367183‑M2/93‑143 (MQ=255) aacaggagggacagctgatagaaacagaagccactggcgcacctcaaaaacaccatcatacactaaatccgtaagttgccagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCggg < 2:727694‑M2/54‑1 (MQ=255) gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAGGTATTACACTCCAGTTTTATTCGTACTGCCCGGGCGcaa > 2:185786‑M2/85‑143 (MQ=255) tggccagctgatagatccacaggccactggagctcctcaaaaacaccatcatacactaaatcattaagttgccagtatcatcTCTGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAgg < 1:381540‑M2/61‑1 (MQ=255) ggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGACAggg > 1:560095‑M2/82‑143 (MQ=255) ggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTATTAAAGAAAATTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAggg > 2:903395‑M2/82‑143 (MQ=255) ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCt > 2:95130‑M2/76‑143 (MQ=255) atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGACGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTAACtgtg > 2:186250‑M2/73‑143 (MQ=255) agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCACTCTGACTGAAGTATTACACTCCAATTCTAGTCGTACTGCCCGGGCGAAAGGGTAACCTAtgca > 1:137295‑M2/71‑142 (MQ=255) aacagatgccactggagcacctcaaaatcaccatcatacactagatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGCAGTATTACTCTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATgcggcg < 1:930181‑M2/76‑1 (MQ=255) aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATgcggcg > 1:654050‑M2/68‑143 (MQ=255) cagaagccactggagctcctcaaaaacaccatcatacactgaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGa < 1:892545‑M2/78‑1 (MQ=255) ctggagcacctcaaagacgccatcatacactaaagcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTAc < 2:571376‑M2/87‑1 (MQ=255) tggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCGCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTACCCCGGCGAACGGGGTACCtatgcggcagacacatcgacg > 1:897898‑M2/56‑133 (MQ=255) agcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCa > 2:195930‑M2/53‑143 (MQ=255) cacctcaaaaccaccagcatacactaactcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACg < 2:47701‑M2/93‑1 (MQ=255) atcgcgagtgctgcatcatacacgtaatcattatgttggcagcatcaccCCCGTGGCTCTATGATTGAGGTATTACTCTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGc < 1:363545‑M2/94‑1 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCAt > 2:185034‑M2/48‑143 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTCCCTATGCGGCGGATCATTTTACGTCACGCAtt > 2:597093‑M2/47‑143 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACCCTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGAGGATCATTTTGCGACACGTAttaca > 1:53073‑M2/44‑141 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATtaac > 2:257174‑M2/44‑142 (MQ=255) aacaccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAAc < 2:558014‑M2/102‑1 (MQ=255) caccatcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATGTTACGTCACGCATTAAAACCt > 2:515535‑M2/40‑143 (MQ=255) catcatacactaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATCTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGct > 1:428334‑M2/37‑143 (MQ=255) tcatacactttatcagtaagttggcagcatcaccCCCGTGGCTTGATGATTGAAGTATTACACTCCAATTTTAGTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGctct < 2:835285‑M2/109‑1 (MQ=255) cgctaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTAc < 2:268352‑M2/114‑1 (MQ=255) actaaatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTAcc < 2:648419‑M2/115‑1 (MQ=255) aaatctgtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGt < 2:331515‑M2/118‑1 (MQ=255) aatcagtaagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTg > 1:487032‑M2/25‑143 (MQ=255) tcagtaagttggacgcatcagtCACGGTGCTCTATGATGGAAGTATTACACTTCAATTTTAGTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGGTCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGct < 1:522516‑M2/121‑1 (MQ=255) taagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGctctct < 2:238280‑M2/125‑1 (MQ=255) taagttggcagcatcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTCTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTCCCCGTGctctct > 2:88641‑M2/19‑143 (MQ=255) gagttggcagcagcaccCCCGTGGCGCTATGGTGGAAGTATGACACTCCAAGTTTAGTCGGACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCtt < 1:895969‑M2/126‑1 (MQ=255) aagttggcagcatcaccCCCGTGGCTCTATGATTTAAGTATTACATTCCAATTTTCTTTGGACTGTCCGGGTGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGTTCTGTTACCCGTGCTCTCtt < 1:332938‑M2/126‑1 (MQ=255) atcaccCCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTCATATGGGcccc > 1:687729‑M2/7‑143 (MQ=255) | TTGCACCATTATTAGTCATGATATTTGCGATCATTTTGCATTGGCTGCCGGGCGGTGGCTGGAATGGTGGGGCGCTTAAATTCATGATATTGCCGATGGTGGCGTTGTCACTCGCTTATATCGCCAGTATTGCGCGTATTACCCGTGGCTCTATGATTGAAGTATTACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCC > NC_000913/1303335‑1303612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |