| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 282061 = | 55 (1.000) | 4 (0.080) | 3/262 | 8.0 | 7.0% | intergenic (‑78/‑217) | yagA/yagE | CP4‑6 prophage, putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase, CP4‑6 prophage |
| ? | NC_000913 | 282118 = | 56 (1.110) | intergenic (‑135/‑160) | yagA/yagE | CP4‑6 prophage, putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase, CP4‑6 prophage | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTATGACGCAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/282211‑282061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccctttggggAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTAGAACAAAAT > NC_000913/282118‑282258 cgagGACGCAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATGGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCC < 1:450888/139‑1CTATGGCGCACAACAAGGAGAGGTAAATCGGCAGGGACGAGGGAGTGCGGGAAATTTAAGCTGGATCACATCTTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCC < 1:450854/143‑1 ATGACGCAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCT < 2:800532/143‑1 gaccgaggacgAGGAGAGGTAAATCGGAGGGGAAGAGGGAGTGCGGGAAGTTTAAGCTGGATCACATATTGCCCCTCTCCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTT < 1:738950/132‑1 gcggAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTG < 2:608562/139‑1 CGCAGAACAAGGAGAGTTAAATCGGAAGAGAAGAGGGAGGGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGG < 2:432986/143‑1 GCAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGG < 2:927485/143‑1 GCAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCCTTGGG > 2:635731/1‑143 GCAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAAGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGG > 2:1757/1‑143 GCAGAACAAGGACAGGTAAACCGGAAGGGAAGAGGGAGTGAAGCAAATATTATCTCGATCACCAATTACCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGG < 2:400440/143‑1 CCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCC > 1:877444/1‑102 CCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCC < 2:877444/102‑1 cccggCCCTCTCCCCAAAGGGGCGAGGGGCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCCTCATAGTATGATCGTTAAATAAACGAACGCTGa > 2:785232/6‑142 CCCTCTCCCCAAAGGGGCGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTAT > 2:388434/1‑143 CCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTAG < 2:803638/143‑1 CTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCCTAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTAGAc > 1:805460/1‑142 CTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGAGCCAGCTTAAATTTCCCGCCCTGCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTAGAA < 1:477806/143‑1 aaaGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCCTAGTATGATCGTTAAATAAACGAACGCTGCTCTATAATGTAGAAC > 1:23879/4‑143 aaaGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGGTAAATACACGAACGCTGTTCTATAAGGTAGAAC > 1:775469/4‑143 GGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTCGAACAAA > 1:484004/1‑143 GGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGACCGCTGTTCTATAAGGTAGAACAAAAT > 1:190257/1‑143 CTATGACGCAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/282211‑282061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccctttggggAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTAGAACAAAAT > NC_000913/282118‑282258 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |