| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 282061 = | 55 (1.000) | 4 (0.080) | 3/262 | 8.0 | 7.0% | intergenic (‑78/‑217) | yagA/yagE | CP4‑6 prophage, putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase, CP4‑6 prophage |
| ? | NC_000913 | 282118 = | 56 (1.110) | intergenic (‑135/‑160) | yagA/yagE | CP4‑6 prophage, putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase, CP4‑6 prophage | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTC > NC_000913/281924‑282201 | aacaaacTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCGTAAACGGGGTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAGCGAGTGTTCACTATGTCCCCGGACCGTACAGCCCaa > 1:28835/1‑143 (MQ=255) acacTCAGTACGTAATGCCATGGTATCCCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAgg < 1:187699/141‑1 (MQ=255) aaacTCAGTACGGAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAgg < 1:749337/143‑1 (MQ=255) gactgggtgcGTAATGGCATGGTCTCTCTCGCATCCCAGGGCATAAGCGACTCCATACACGGGTTCTTATGCCTTAGTTGGAAGTGTCTACCATGTCCGCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAggg < 1:46513/134‑1 (MQ=255) cgcAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGga < 1:132058/141‑1 (MQ=255) tCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAACCGGGCTCTTACGCCGTCGTCGTAAGTGTCTACCATGTCCCCCAACAAACGCTCACTAAGTCCCCACCCCCCACACCCCaaacagaca > 1:293193/1‑137 (MQ=255) aGTACGGAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGagag < 1:533851/143‑1 (MQ=255) ggaCGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAgg < 1:509068/141‑1 (MQ=255) tACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAggg < 2:155278/143‑1 (MQ=255) cGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTCCACCCCAAAGGGGAGCGGGGa > 2:551285/1‑143 (MQ=255) gACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAACCGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACCCCCCAAAGGGGAGAGGGGACTGCAc > 2:291706/1‑143 (MQ=255) aTGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGCGAGGGGACTGCACCGa > 2:857970/1‑143 (MQ=255) ggTATCTCGCGCGGCCCAGGGCGTGAGCGACTCCATAATCGGGTTCTTATGCCTTAGTTGTAAGTGTCGACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGc < 2:460776/143‑1 (MQ=255) gTATCTCTCGCATCCCAGGGCATAAGCGAATCCATAAGCGGTTTCTTATGCCTTCGTTGTAAGTGTCTACGATGTCCCCGAACACGTGTTAACGGTGTCCCCGGACCGTACCCCCCAAAGGGGAGAGGGCACTGGACAGAAcc > 1:449649/1‑143 (MQ=255) tctcGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCtt > 1:23227/1‑143 (MQ=255) cAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGCGTCTACCATGTCCCCGAACAAGGGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCCTCTCCTCCCCcgcg > 1:318467/1‑143 (MQ=255) tgctgaatctccTCCATAATCGGGGTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAATGGGGAGAGGTGACTGCACCGAGCCATCTTTTCCCCCTCGccc < 1:756/132‑1 (MQ=255) aaGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTg < 1:496306/143‑1 (MQ=255) aGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTgg < 1:253552/143‑1 (MQ=255) aGCGACGTCAGAAGCGGGTTCTTATGCGTTAGTTCCAACTGCCAATCACGCCGCCTTACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTgg < 1:876625/143‑1 (MQ=255) gcggctcccgaagggggTGCTTATGCCTTAGTTGTAAGTGTCTACCATGTCGCCGAAGAAGTGTTCACTATGTCTCCGGACCGTGCACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTggg < 2:416653/129‑1 (MQ=255) gACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGACGGGACTGCACCGAGCCATCTTTACCCCCTCGcacccataggga > 1:852638/1‑135 (MQ=255) cTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCACCTTTGGGgaga > 1:803638/1‑143 (MQ=255) cctcaaCGGGTTCGGCTGCCTTAGTTGTAAGTGTCTACCATGGCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAggg < 2:340621/139‑1 (MQ=255) aCGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCggg < 1:99303/143‑1 (MQ=255) ttCTTATGCCTTAGTTGTAAGGGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAg < 1:58188/143‑1 (MQ=255) tCTTATGCCTTAGTTGTAAGTGGCTACCATGGCCCCGAACAAGTGTTCACTATGTCCCCGGACCATACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCTGGGGTGAgg < 1:374244/143‑1 (MQ=255) tCTTATGCCTTAGTTGTAAGTGACTACCATGCCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAgg < 2:262775/143‑1 (MQ=255) cTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAggg > 2:571408/1‑143 (MQ=255) ttAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCAGGAACGTACACCCCCAAGGGCAGAGGGGACTGCCCCGAGCCATCTTTTCCCCCCCGCCCGTTCGGGGAGAGGGCCGGGGGGCGGGGCactgtg > 1:830497/1‑138 (MQ=255) tAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATAtgt > 2:272019/1‑143 (MQ=255) ttGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCCAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCGCGCCCCGTCGGGGGCAGGCCCGGCGGGACGGGCGatacgcgct > 1:813145/1‑137 (MQ=255) gTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGCGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGAGCCGGGGTGAGGGGCAATATGTGATcc > 2:232493/1‑143 (MQ=255) aaGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAg > 2:530530/1‑143 (MQ=255) tCTACCATGTCCCCGATCAAGTTTTAACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTaa < 2:527287/143‑1 (MQ=255) tACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGTATGCACTTCATCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAAt < 2:947883/143‑1 (MQ=255) cATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGAGCCAGCTTAAATTTc > 2:271473/1‑143 (MQ=255) tGTCCCCGAACAAGTGTTCACTATGCCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTccc < 2:675465/143‑1 (MQ=255) ccccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGGGGGGACTGCACCGAGCCATCTTTTCGCCCTCGACCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCGGCTTAAATTTGCCGCa > 2:683757/1‑143 (MQ=255) ccccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCa < 2:23227/143‑1 (MQ=255) cccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCAc > 1:933355/1‑143 (MQ=255) cccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCAc > 2:605302/1‑143 (MQ=255) ccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGAGCCGAGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACt > 2:805842/1‑143 (MQ=255) aaCAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCAACTTTTCCCACTCGCCCCTTTGGGGAGAGGACCGGGGTGAGGGGCCATATGTGGTCCAGCTTAAATTTCCCGCACTccc > 2:20613/1‑143 (MQ=255) aGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTctt < 2:479120/143‑1 (MQ=255) gtgtTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGGGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTcttc > 1:599264/1‑143 (MQ=255) gtggTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTcttc < 2:82124/143‑1 (MQ=255) tATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGTCATCTTTTCCCCCTCGCTCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGa < 2:127645/143‑1 (MQ=255) tCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTa < 2:791799/143‑1 (MQ=255) ccGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTAccg > 2:363076/1‑142 (MQ=255) cGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAGATCTCCGGCACTCCCGCTTCCCCTCCGCTTTACctc > 2:82757/1‑143 (MQ=255) cGGACCGAACCCCCCAAAGGGGAGAGCGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGTAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACctc < 2:763726/143‑1 (MQ=255) aCCGTACACCCCAAAGGGGAGCGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTACATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTcc < 1:435771/143‑1 (MQ=255) tACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGAGTTACCTCTCCTTGt > 2:421438/1‑143 (MQ=255) cacCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTc < 2:65246/143‑1 (MQ=255) | AACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTC > NC_000913/281924‑282201 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |