New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1738878 =	50 (0.910)	4 (0.080)	3/268	8.1	7.8%	coding (921/933 nt)	ydhB	LysR family putative transcriptional regulator
	?	NC_000913	1738904 =	48 (0.930)					coding (895/933 nt)	ydhB	LysR family putative transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATCGTATCGTCAACAAACGTGAAGAACCGCAGTCTATTGAAGTGCATCCGCGCTTGATTGAACGCCGCTCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAATCCGGAAAGGGGTTTTCCAGTTCTAATGCTACCCACT  >  NC_000913/1738762‑1739041                                                                                                                                               |                                                                                                                                          gATCGTATCGTCAACAAACGTGAAGAACCGCAGTCTATTGAAGTGCATCCGCGCTTGATTGAACGCCGCTCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAg                                                                                                                                           <  2:401580/143‑1 (MQ=255) gATCGTATCGTCAACAAACGTGAAGAACCGCAGTCTATTGAAGTGCATCCGCGCTTGATTGAACGCCGCTCCGTGGCTGACGGCCCGTTCCGCGACTATCGGCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAg                                                                                                                                           >  1:610103/1‑143 (MQ=255)         cgtCAACAAACGTGAAGAACCGCAGTCTATTGAAGTGCATCCGCGCTTGATTGAACGCCGCTCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCt                                                                                                                                   <  2:294289/143‑1 (MQ=255)           tCAACAAACGTGAAGAACCGCAGTCTATTGAAGTGCATCCGCGCTTGATTGAACGCCGCTCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCGTCCGGCTCCCGCCGCCACCCCttc                                                                                                                                 >  1:758959/1‑142 (MQ=255)            caacaaACGTGAAGAACCGCAGTCTATTGAAGTGCATCCGCGCTTGATTGAACGCCGCTCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTAt                                                                                                                                <  2:309260/143‑1 (MQ=255)                    gTGAAGAACCGCAGTCTATTGAAGTGCATCCGCGCTTGATTGAACGCCGCTCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGtc                                                                                                                        >  2:753964/1‑143 (MQ=255)                          aaCCGCAGTCTATTGAAGTGCATCCGCGCTTGATTGAACGCCGCTCCGTGGCTGACGGCCCGTTCCGCGACTCTCGTCGCTAATCACCCCTTGCGGGAGTCTCTTCCTGCCCCCGCGGCGACTCCTTCTCCACCGCCTCAcca                                                                                                                  >  1:443608/1‑141 (MQ=255)                            ccGCAGTCTATTGAAGTGCATCCGCGGTTGATTGAACGCCGCTCCGTGGCTGACGGCCCGTTCCGCGACTAGCGTCGTTAATGACGCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATc                                                                                                                <  1:579311/143‑1 (MQ=255)                            ccGCAGGCTATTGAAGTGCATCCGCGCTTGATTGAACGCCGCTCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTACTCACCCGTCGCGGCAGGCTCCTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCGCACtctc                                                                                                                >  1:314717/1‑143 (MQ=255)                                aggccaTTGAAGTGCATCCGCGCTTGATTGAACGCCGCGCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCg                                                                                                            <  2:188907/138‑1 (MQ=255)                                   cTATTGAAGTGCATCCGCGCTTGATTGAACGCCGCTCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCgtga                                                                                                         <  1:913986/143‑1 (MQ=255)                                           gTGCATCCGCGCTTGATTGAACGCCGCTCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTTATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGCGCGACTCAAg                                                                                                 >  2:125688/1‑143 (MQ=255)                                                  cgcgCTTGATTGAACGCCGCTCGGGGGCGGACGGCCCGTTCCGTGACTATCGGCGTTAATCACCCGTTGCGCGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACGATCGCCGAGATACTCAAGCAACCAg                                                                                          <  1:610164/143‑1 (MQ=255)                                                  cgcgCTTGATTGAACGCCGCTCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAg                                                                                          >  2:916639/1‑143 (MQ=255)                                                           ttgaACGCCGCTCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGCGCTACTCAAGCAACCAggctccccca                                                                                 >  2:647123/1‑135 (MQ=255)                                                           ttgaACGCCGCGCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCa                                                                                 <  2:497990/143‑1 (MQ=255)                                                              aaCGCCGCGCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCCGCGTCTCACCATCGCCGCGCTCCTCAAGCAACCggggcaccgcacga                                                                              >  1:296130/1‑132 (MQ=255)                                                                 gccgcTCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCTACACGGTCCGCGAGCAACCAGGGTAACGGAGGccgc                                                                           >  1:534897/1‑140 (MQ=255)                                                                        cGTGGCTGACGGCCCGTTCCGCGACGATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCAt                                                                    <  2:165823/143‑1 (MQ=255)                                                                             cttaCGGCCCGTTCCGCGACTATCGTCGTTAATCATCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTtgc                                                               <  2:512488/140‑1 (MQ=255)                                                                                aCGGCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTtgctgc                                                            <  2:658802/143‑1 (MQ=255)                                                                                 cGGCCCGTCCCGCGACTATCGTCTTTAATCACCCGTTGCGTGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGcc                                                           <  1:850343/143‑1 (MQ=255)                                                                                  ggCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCa                                                          <  2:610103/143‑1 (MQ=255)                                                                                  ggCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCa                                                          <  2:450346/143‑1 (MQ=255)                                                                                      cGTTCCGCGACTAGCGTCTTTAATCACCCGTTGCGGGAGCCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGTTTAACGCAGGCGACATATCATTTTGCTGCCATGTc                                                      <  2:363842/143‑1 (MQ=255)                                                                                       gTTCCGCGGCTGTCGCCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCa                                                     <  1:147871/143‑1 (MQ=255)                                                                                       gTTCCGCGACTATCTTCGTTAATCCCCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCTCTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCa                                                     <  1:379496/143‑1 (MQ=255)                                                                                          ccGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCCGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACCCACGCAACCCGGTTAACGCAGGCGACATATCATTTTGCTGCCCTGGCAGac                                                  >  1:692368/1‑143 (MQ=255)                                                                                          ccGCGACTAGCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTACCGCAGGCGACATATCATTTTGCTGCCATGTCAGac                                                  <  2:405741/143‑1 (MQ=255)                                                                                                  aTCGTCCTTAATCACCCTTTGCGGGAGTCTCTTCGGGCTCCCGCAGCCCCTCCTTATTCAGCGTCTCACTCTCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGcc                                          <  1:894613/143‑1 (MQ=255)                                                                                                      tcgtTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAAt                                      >  2:814469/1‑143 (MQ=255)                                                                                                        gtTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCCGGCGACATATCATTTTGCTGCCATGTCAGACCACATGCCGACTcc                                    >  2:629397/1‑143 (MQ=255)                                                                                                         ttagccACCCTGTGCGTGAGTCTCTTCCGGCCCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAATCCg                                   <  1:268454/138‑1 (MQ=255)                                                                                                          gaagcACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAATCCgg                                  <  2:921459/139‑1 (MQ=255)                                                                                                           aaTCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAATCCGGa                                 <  2:318102/143‑1 (MQ=255)                                                                                                               aCCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAATCATCCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGCCACCATGCCGAATCCGGAAAgg                             >  2:598911/1‑143 (MQ=255)                                                                                                                cccGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAATCCGGAAAggg                            >  1:427644/1‑143 (MQ=255)                                                                                                                cccGTGGCGCGGGTCTCTCCCGGCGCCCGCAGCCACTCCTTATTCAGCGGCTCCCTAGCGCCGGGATACGCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAATCCGGAAAggg                            <  1:874584/143‑1 (MQ=255)                                                                                                                    ttGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACCCAGGCGACATATCCTTTTGCTGCCATGTCAGACAACATGCCGCATCCGGACACTGGttt                        >  2:258434/1‑143 (MQ=255)                                                                                                                       cGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAATCCGGAAAGGGGTTTTcc                     >  2:880960/1‑143 (MQ=255)                                                                                                                        gggAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCCAGCAACCAGGTTAACGCAGGCGACCTATCATTTTCCTCCCGTTTCATACTACACGCACACTCCGGAAAgagattatcaa                    >  2:190831/1‑133 (MQ=255)                                                                                                                        gggAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAATCCGGAAAGGGGTTTTCCa                    <  2:317887/143‑1 (MQ=255)                                                                                                                           ggcgtctTCCGCCTCCCGCAGCCCCTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAATCCGGAAAGGGGTTTTCCAGtt                 <  2:918274/139‑1 (MQ=255)                                                                                                                             tctcTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGCTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAATCCGGACAGGGTCTTTCCCGTTCt               >  2:813063/1‑143 (MQ=255)                                                                                                                               tctTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGGTAACGCAGGCGACATATCATCTTGCTGCCCCGTCAGACAACCTGCCGAATCCGGAAAGGGGGGTTCCAggacgat             >  1:721721/1‑137 (MQ=255)                                                                                                                               tctTCCGGCTCCCACAGCCGCTGCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTCAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAATCCGGAAAGGGGTTTTCCAGTTCTaa             <  1:615880/143‑1 (MQ=255)                                                                                                                                ctgccGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAATCCGGAAAGGGGTTTTCCAGTTCTAAt            <  2:920237/140‑1 (MQ=255)                                                                                                                                 ttCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAATCCGGAAAGGGGGTTTCCAGTGCTAATg           >  2:388689/1‑143 (MQ=255)                                                                                                                                          ccGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCCGCTCCGCCACCCTGCCGAATCCGGCCCGGGGTGGTCCAGTTCTCCTGCTGCCctct  >  1:284495/1‑143 (MQ=255)                                                                                                                                          ccGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAATCCGGCAAGGGGTTTTCCAGTTCTAATGCTACCCACt  >  1:952345/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                          GATCGTATCGTCAACAAACGTGAAGAACCGCAGTCTATTGAAGTGCATCCGCGCTTGATTGAACGCCGCTCCGTGGCTGACGGCCCGTTCCGCGACTATCGTCGTTAATCACCCGTTGCGGGAGTCTCTTCCGGCTCCCGCAGCCACTCCTTATTCAGCGTCTCACTATCGCCGAGATACTCAAGCAACCAGGTTAACGCAGGCGACATATCATTTTGCTGCCATGTCAGACAACATGCCGAATCCGGAAAGGGGTTTTCCAGTTCTAATGCTACCCACT  >  NC_000913/1738762‑1739041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.