New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 354612	40 (1.000)	3 (0.080)	3/270	5.7	7.3%	noncoding (14/171 nt)	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences
	?	NC_000913	= 354646	38 (1.000)					noncoding (48/171 nt)	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/354507‑354612 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtcgcATCAGGCATCGGCACACAGTGCCGGATGCACCGCGCGACGCATCCGACAATAACCTACTCTTCCATCGCCTGGCGGATCTGATCCAACGACGCAGGATCATCAATGGTCGTCAGATCTCCAGGATCGCGTCCTTCGCA  <  NC_000913/354646‑354509                                                                                                                                                                                                                                                      TTTGCCAAGGACGCGGTCCTGGAGATCTGACGACCATGGATGATCCTGCGTCGTTGGCTCAGATCCGCCAGGCGATGCAAGCGTAGCTTATTGTCGGATGCGTCGCGCGGTGCATCGGCACACAGTGCCGGATGCACCGCGCG                                                                                                       <  2:695137/143‑1    gcgcgGGACGCGAGCCTGGAGATCGGACGACCATTGATGGCCCTGCGTCGTTGGATCGGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCATCAGGCATCGGCACACAGTGCCGGATGCACCGCGCGACG                                                                                                    <  2:682294/138‑1        AGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAATAGTAGGTTATTGTCGGATGCGTCGCATCAGGCATCGGCACACAGTGCCGGATGCACCGCGCGACGCATC                                                                                                <  1:546490/143‑1                                                                                                    GCGTCGCATCAGGCATCGGCACACAGTGCCGGATGCACCGCGCGACGCATCCGACAATAACCTACTCTTCCATCGCCTGGCGGATCTGATCCAACGACGCAGGCTCATCAATGGTCGTCAGATCTCCAGGATCGCGTCCTTCG    >  1:629700/1‑143                                                                                                      GTCGCATCAGGCATCGGCACACAGTGCCGGAGGCACCGCGCGACGCATCCGACAATAACCTACTCTTCCATCGCCTGGCGGATCTGATCCAACGACGCAGGATCATCAATGGTCGTCAGATCTCCAGGATCGCGTCCTTCGCA  >  1:666183/1‑143                                                                                                                                                                                                                                                      TTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/354507‑354612 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtcgcATCAGGCATCGGCACACAGTGCCGGATGCACCGCGCGACGCATCCGACAATAACCTACTCTTCCATCGCCTGGCGGATCTGATCCAACGACGCAGGATCATCAATGGTCGTCAGATCTCCAGGATCGCGTCCTTCGCA  <  NC_000913/354646‑354509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.