New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 35461240 (1.000)3 (0.080) 3/270 5.7 7.3% noncoding (14/171 nt) REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences
?NC_000913 = 354646 38 (1.000)noncoding (48/171 nt) REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCT  >  NC_000913/354471‑354748
                                                                                                                                             |                                                                                                                                        
gagccgaacaaaTGCAGCGCTTCACCATCCAGGCGATTTCCGAAGGAGGCGTTCCTGGAGATCTGACGAACATTGACGATCCTCCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTcgcg                                                                                                                                         <  1:620366/134‑1 (MQ=255)
   ccGCAAAAAGGCTGCGCCGCACGAGCGCGGCGAGTTGCGAAGGACGCGATCCTGGAGATCTGACGACCAGTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCgg                                                                                                                                      <  2:437272/143‑1 (MQ=255)
        aaaaTGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCAt                                                                                                                                 <  1:577794/143‑1 (MQ=255)
         aagtgctgcGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATc                                                                                                                                <  2:128552/140‑1 (MQ=255)
              ctgcGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCa                                                                                                                           <  1:310919/143‑1 (MQ=255)
                   ccgcACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGGCGCGCGGTGCATCCGGCACtgtg                                                                                                                      >  2:166592/1‑143 (MQ=255)
                           tCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGGTg                                                                                                              >  1:576503/1‑143 (MQ=255)
                            ccAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGCCCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGc                                                                                                             <  1:6882/143‑1 (MQ=255)
                             cAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTCCATCCGGCGCTGTGTGCCGATGcc                                                                                                            >  2:109055/1‑143 (MQ=255)
                              cggCGATGTCCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGGTCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCt                                                                                                           <  2:656349/142‑1 (MQ=255)
                              aGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCt                                                                                                           <  1:282134/143‑1 (MQ=255)
                              aGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCt                                                                                                           >  1:591098/1‑143 (MQ=255)
                                    tttGCCAAGGACGCGGTCCTGGAGATCTGACGACCATGGATGATCCTGCGTCGTTGGCTCAGATCCGCCAGGCGATGCAAGCGTAGCTTATTGTCGGATGCGTCGCGCGGTGCAT‑CGGCACACAGTGCCggatgcaccgcgcg                                                                                                    <  2:695137/143‑14 (MQ=255)
                                      tGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCCTCCGGCACTGTGTGCCGATGCCTGATGCGAc                                                                                                   <  1:666183/143‑1 (MQ=255)
                                        cGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGAGCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGc                                                                                                 <  1:629700/143‑1 (MQ=255)
                                                  gATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGAAGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCCTCCGGCACGATGTGCCGATGCCTGACGCGCCGCTGACGCGgtt                                                                                       >  2:225499/1‑143 (MQ=255)
                                                      cTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATc                                                                                   <  2:107343/143‑1 (MQ=255)
                                                       tGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCTTGTTATCa                                                                                  <  2:500420/143‑1 (MQ=255)
                                                       tGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCa                                                                                  <  1:388539/143‑1 (MQ=255)
                                                        ggAGAGCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCAt                                                                                 <  2:588610/143‑1 (MQ=255)
                                                            aTCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGCCGCGTTTTATCATGCCt                                                                             >  1:262611/1‑143 (MQ=255)
                                                                  cgccgatggatgagCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGCCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGAc                                                                       <  2:181185/135‑1 (MQ=255)
                                                                    acCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGGTGCCTGATGCGCCGCTGACGCGTTTTCTCATGCCTACGGACCt                                                                     >  1:47046/1‑143 (MQ=255)
                                                                          gatggtCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCg                                                               <  2:165501/143‑1 (MQ=255)
                                                                           atgatCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGt                                                              <  2:686979/143‑1 (MQ=255)
                                                                           atgatCCTGCGTCGTTGGACCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGt                                                              >  1:198182/1‑143 (MQ=255)
                                                                             gatCCTGCGGCGTTGCTTCAGATCGGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACggttcaggtccgtag                                                            <  1:344140/143‑14 (MQ=38)
                                                                                  tGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTGGGTCgg                                                       >  1:631245/1‑143 (MQ=255)
                                                                                  tGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATACCTACGGACATGCATTGAAGGTCga                                                       >  2:613/1‑142 (MQ=38)
                                                                                         ttGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgc                                                <  1:567518/143‑1 (MQ=255)
                                                                                              tcagatgctgcgggCGATGGCAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGCCTCTGTGTGCCGATGCCTGATTCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTcg                                           <  2:79951/131‑1 (MQ=255)
                                                                                              tCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTcg                                           >  2:89163/1‑143 (MQ=255)
                                                                                                  aTCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGCACCGCACAGGCGATAAGGCGCTCGCGTc                                       >  2:452353/1‑143 (MQ=38)
                                                                                                   tCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGGAGGTCGGATCAGGCGCTCgcggcg                                      >  1:507351/1‑143 (MQ=255)
                                                                                                      gCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGAAGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCAt                                   >  1:14976/1‑143 (MQ=255)
                                                                                                                         ggTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCGCTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATg                <  1:392283/143‑1 (MQ=255)
                                                                                                                          gTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCTACACCATGCTCAGATGc               >  1:373674/1‑143 (MQ=255)
                                                                                                                            tATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCt             <  2:503255/143‑1 (MQ=255)
                                                                                                                               tGTCGGAGGGGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGAt          <  1:172504/143‑1 (MQ=255)
                                                                                                                                   ggATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCAGGTAAGGCGCTCGCGGCGCATCCGAAACCATGCTCAGATGCCTGATGCGa      >  1:570925/1‑143 (MQ=255)
                                                                                                                                       gCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCt  >  2:54920/1‑143 (MQ=255)
                                                                                                                                             |                                                                                                                                        
GATCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCT  >  NC_000913/354471‑354748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.