New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 340004	47 (1.180)	4 (0.110)	4/270	5.1	8.2%	noncoding (248/358 nt)	REP23 (repetitive extragenic palindromic) element, contains 8 REP sequences	REP23 (repetitive extragenic palindromic) element, contains 8 REP sequences
	?	NC_000913	= 340015	45 (1.190)					noncoding (259/358 nt)	REP23 (repetitive extragenic palindromic) element, contains 8 REP sequences	REP23 (repetitive extragenic palindromic) element, contains 8 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCT  >  NC_000913/339868‑340145                                                                                                                                         |                                                                                                                                              gCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGt                                                                                                                                         >  1:401100/1‑143 (MQ=255) gCCTGATCCGGCCTACGAATGGCGCAACAATCTGGAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGt                                                                                                                                         <  2:446544/143‑1 (MQ=255)         cGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATc                                                                                                                                 >  1:221007/1‑143 (MQ=255)          ggCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCa                                                                                                                                >  1:669659/1‑143 (MQ=255)                     ggtgcAATAATCTGTAGGCGTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCa                                                                                                                     <  1:459753/140‑1 (MQ=255)                     ggCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCa                                                                                                                     >  1:443777/1‑143 (MQ=255)                        gcAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCCCCAGGCATTTGTCActg                                                                                                                  >  2:105259/1‑141 (MQ=255)                                       ccTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATgcggcg                                                                                                   <  1:554024/143‑1 (MQ=255)                                        cTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGAACgcggcgc                                                                                                  >  2:217902/1‑142 (MQ=255)                                               gCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGcc                                                                                           <  2:401100/143‑1 (MQ=255)                                                cGTAGCGCATCAGGCATTTGCCACGAATGCTGGTTGCGGCGTGGACGCCTTAAAAAGTGATGGGATTGAGCAAATTTCAACGGGCCTGATAAGCGTGGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGGGAACGGCt                                                                                          >  2:146449/1‑143 (MQ=2)                                                  tAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGCGGCGCGAGCATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGGTGCGGCGTGCACGCCttc                                                                                        >  1:528795/1‑142 (MQ=255)                                                       cctCAGGCATGTGCCGCCCGTGCCGGATGCGGCGTGGAAGCCTTCTCGGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCgg                                                                                   <  2:76874/141‑1 (MQ=14)                                                          cAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGCAGGCCTAATAAGCCTAGCGCATCAGGCATCTGGCACCCTCGCCGGACGCGGCGCCAACGccgttccccgcct                                                                                >  2:682350/1‑132 (MQ=17)                                                           aGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTCGGCCTCATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGGGAACCCCGTCGCCGGccca                                                                               >  2:129889/1‑141 (MQ=17)                                                           aGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                               >  1:411455/1‑143 (MQ=255)                                                            ggCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCGTCAGGCATTTGTCACCATTGCCGGACGCGGCGTGAACGCCTGATCCGGCCtcc                                                                              >  2:442657/1‑141 (MQ=255)                                                             gCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCCGCCTACg                                                                             >  2:29932/1‑143 (MQ=255)                                                                tttGCCCCCTCTGCCGGATGCTGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGt                                                                          <  2:412685/143‑1 (MQ=255)                                                                tgtgccgctcgtGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGt                                                                          <  2:342933/132‑1 (MQ=255)                                                                 ttGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGGCTTATCCGGCCTACGAGTg                                                                         >  1:607232/1‑143 (MQ=255)                                                                   ggtgccgcTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGTGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGgc                                                                       <  2:31284/136‑1 (MQ=255)                                                                           tGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGcgcgcggat                                                               >  1:45932/1‑138 (MQ=255)                                                                            gCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCCGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAAtt                                                              >  1:199717/1‑143 (MQ=255)                                                                               ggATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTCATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTa                                                           <  1:60971/143‑1 (MQ=255)                                                                                gATGCGGCGTGGTCGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATGAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAg                                                          <  1:699989/143‑1 (MQ=255)                                                                                gATGCGCCGTCGCCCCCCTATCCGGCCTGTGTTTGTCGAGAGAATCTTTAGGCCTGATAAGCGTAGCGCACCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAg                                                          <  2:216513/143‑1 (MQ=14)                                                                                    cggcgTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATACGCGAAGCGCATCCGGCATTTGTCACCATTGCCGGATGCGGCGCGAACGGCTGATCCGGCATACACGTGGcgcggcaggggtaggccg                                                      >  2:426528/1‑129 (MQ=14)                                                                                         tGGACGCCCTATCCGGCCCACGAGTGGAGCGAGAATCCGTAGGCCTGATAAGCGTAGCGCCTCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATaa                                                 <  1:134480/143‑1 (MQ=17)                                                                                         gggtcGCCTTAGCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGTATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATaa                                                 <  2:342461/139‑1 (MQ=255)                                                                                           gACGCCTTATTCGGGGTGCGACTGGCGCGAGAATCTGTAGGCCGGATAAGCGTAGCGCATCAGGCATTTGTCACCGTTGCCGGATGCGGCGTGAACGCCTTGGCCTTCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGc                                               <  2:148613/143‑1 (MQ=14)                                                                                           gACGCCTGATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGc                                               <  1:425995/143‑1 (MQ=255)                                                                                              gccctctCCGGCCTACGAGTGGCGCAAGAATCTGTAGGCCTGGTAAGCGTAGCGCATCAGGCATTGGTCACCATTGCCTGGTGCGGCGTGAACGGCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTa                                            <  1:98170/137‑1 (MQ=14)                                                                                                cTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCGGGCATTCGGCCCCATTGCCGGATGCGGGGAGACCGCCTTATCCGGCCTACGAGGGGCGCGCGATTTGTGGGGCCGCTACGCGTCgc                                          >  2:260061/1‑143 (MQ=14)                                                                                                cTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGGAGGCCTGATAAGCGTAgc                                          >  1:647446/1‑143 (MQ=255)                                                                                                            cgcatcgccgcgAGAGCCTGTAGGCCTGCTAAGCGTAGCGCAGCAGGCCCTTCTCGGCCTGGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGt                              <  2:437828/135‑1 (MQ=14)                                                                                                                     gcgcGAATCTGTAGGCCTGATAGGCGTAGCGCATCAGGCATTTGTCACCTTTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTg                     <  2:153419/143‑1 (MQ=255)                                                                                                                       gagaATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGt                   <  1:117776/143‑1 (MQ=255)                                                                                                                           aTCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATAGTAAGCCTGATAAGCGTAGCGCACCAGGCAGTCTGGCGTTGGTCAtc               >  2:269642/1‑142 (MQ=255)                                                                                                                            tCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAATGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCCTCAGGCAGGCTGGCGTTGGTCATaa              >  1:70743/1‑143 (MQ=255)                                                                                                                              tGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGACAGCCTTATTCGGCCCCCGACTGTAGCGTCCCGCTCACACCCGAGAAGCGTAGCGCATCAGGCACACTGGCGCTGGTCAGAAcc            >  2:308304/1‑143 (MQ=2)                                                                                                                                tAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGCCTGGTAGGCCTGATACGCGTCGCGCATCCGGCAGGCTGGCGTTCGTCACAAcccc          >  2:444324/1‑143 (MQ=17)                                                                                                                                tAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAAcccc          >  1:578672/1‑143 (MQ=255)                                                                                                                                tAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGCAGCGCATCAGGCAGTCTGGCGTTGGTCATAAccgc          >  2:408830/1‑141 (MQ=255)                                                                                                                                   gCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCAGGATGCGGCGTGAACGCCTTATCCGGCCAACGAAAGGCGCGAGAATGGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCACACGCAATAACCCCATc       >  2:615917/1‑143 (MQ=14)                                                                                                                                        aTAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGGGGCGTGAACGCCTTATCCGGCCTACGGGTGGAGCGAGAATTGTAGGCCTGACAAGAGTGGCGCATCAGGCAGCCTGGCGGTGGTAGGACCCCCGTCACCct  >  2:163140/1‑143 (MQ=14)                                                                                                                                        aTAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGCGTGGCGCGAGGATTGTAGGCCTGATAAGCGTAGAGCGTCAGGCAGACTGGAGGTGGTCAGAACGCCATAACCct  >  2:261898/1‑143 (MQ=17)                                                                                                                                         |                                                                                                                                              GCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCT  >  NC_000913/339868‑340145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.