New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 340004	47 (1.180)	4 (0.110)	4/270	5.1	8.2%	noncoding (248/358 nt)	REP23 (repetitive extragenic palindromic) element, contains 8 REP sequences	REP23 (repetitive extragenic palindromic) element, contains 8 REP sequences
	?	NC_000913	= 340015	45 (1.190)					noncoding (259/358 nt)	REP23 (repetitive extragenic palindromic) element, contains 8 REP sequences	REP23 (repetitive extragenic palindromic) element, contains 8 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAG  >  NC_000913/339876‑340151                                                                                                                                            |                                                                                                                                         cGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATc                                                                                                                                       >  1:221007/1‑143 (MQ=255)  ggCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCa                                                                                                                                      >  1:669659/1‑143 (MQ=255)             ggtgcAATAATCTGTAGGCGTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCa                                                                                                                           <  1:459753/140‑1 (MQ=255)             ggCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCa                                                                                                                           >  1:443777/1‑143 (MQ=255)                gcAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCCCCAGGCATTTGTCActg                                                                                                                        >  2:105259/1‑141 (MQ=255)                               ccTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATgcggcg                                                                                                         <  1:554024/143‑1 (MQ=255)                                cTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGAACgcggcgc                                                                                                        >  2:217902/1‑142 (MQ=255)                                       gCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGcc                                                                                                 <  2:401100/143‑1 (MQ=255)                                        cGTAGCGCATCAGGCATTTGCCACGAATGCTGGTTGCGGCGTGGACGCCTTAAAAAGTGATGGGATTGAGCAAATTTCAACGGGCCTGATAAGCGTGGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGGGAACGGCt                                                                                                >  2:146449/1‑143 (MQ=2)                                          tAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGCGGCGCGAGCATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGGTGCGGCGTGCACGCCttc                                                                                              >  1:528795/1‑142 (MQ=255)                                               cctCAGGCATGTGCCGCCCGTGCCGGATGCGGCGTGGAAGCCTTCTCGGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCgg                                                                                         <  2:76874/141‑1 (MQ=14)                                                  cAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGCAGGCCTAATAAGCCTAGCGCATCAGGCATCTGGCACCCTCGCCGGACGCGGCGCCAACGccgttccccgcct                                                                                      >  2:682350/1‑132 (MQ=17)                                                   aGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTCGGCCTCATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGGGAACCCCGTCGCCGGccca                                                                                     >  2:129889/1‑141 (MQ=17)                                                   aGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                                     >  1:411455/1‑143 (MQ=255)                                                    ggCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCGTCAGGCATTTGTCACCATTGCCGGACGCGGCGTGAACGCCTGATCCGGCCtcc                                                                                    >  2:442657/1‑141 (MQ=255)                                                     gCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCCGCCTACg                                                                                   >  2:29932/1‑143 (MQ=255)                                                        tttGCCCCCTCTGCCGGATGCTGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGt                                                                                <  2:412685/143‑1 (MQ=255)                                                        tgtgccgctcgtGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGt                                                                                <  2:342933/132‑1 (MQ=255)                                                         ttGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGGCTTATCCGGCCTACGAGTg                                                                               >  1:607232/1‑143 (MQ=255)                                                           ggtgccgcTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGTGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGgc                                                                             <  2:31284/136‑1 (MQ=255)                                                                   tGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGcgcgcggat                                                                     >  1:45932/1‑138 (MQ=255)                                                                    gCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCCGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAAtt                                                                    >  1:199717/1‑143 (MQ=255)                                                                       ggATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTCATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTa                                                                 <  1:60971/143‑1 (MQ=255)                                                                        gATGCGGCGTGGTCGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATGAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAg                                                                <  1:699989/143‑1 (MQ=255)                                                                        gATGCGCCGTCGCCCCCCTATCCGGCCTGTGTTTGTCGAGAGAATCTTTAGGCCTGATAAGCGTAGCGCACCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAg                                                                <  2:216513/143‑1 (MQ=14)                                                                            cggcgTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATACGCGAAGCGCATCCGGCATTTGTCACCATTGCCGGATGCGGCGCGAACGGCTGATCCGGCATACACGTGGcgcggcaggggtaggccg                                                            >  2:426528/1‑129 (MQ=14)                                                                                 tGGACGCCCTATCCGGCCCACGAGTGGAGCGAGAATCCGTAGGCCTGATAAGCGTAGCGCCTCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATaa                                                       <  1:134480/143‑1 (MQ=17)                                                                                 gggtcGCCTTAGCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGTATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATaa                                                       <  2:342461/139‑1 (MQ=255)                                                                                   gACGCCTTATTCGGGGTGCGACTGGCGCGAGAATCTGTAGGCCGGATAAGCGTAGCGCATCAGGCATTTGTCACCGTTGCCGGATGCGGCGTGAACGCCTTGGCCTTCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGc                                                     <  2:148613/143‑1 (MQ=14)                                                                                   gACGCCTGATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGc                                                     <  1:425995/143‑1 (MQ=255)                                                                                      gccctctCCGGCCTACGAGTGGCGCAAGAATCTGTAGGCCTGGTAAGCGTAGCGCATCAGGCATTGGTCACCATTGCCTGGTGCGGCGTGAACGGCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTa                                                  <  1:98170/137‑1 (MQ=14)                                                                                        cTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCGGGCATTCGGCCCCATTGCCGGATGCGGGGAGACCGCCTTATCCGGCCTACGAGGGGCGCGCGATTTGTGGGGCCGCTACGCGTCgc                                                >  2:260061/1‑143 (MQ=14)                                                                                        cTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGGAGGCCTGATAAGCGTAgc                                                >  1:647446/1‑143 (MQ=255)                                                                                                    cgcatcgccgcgAGAGCCTGTAGGCCTGCTAAGCGTAGCGCAGCAGGCCCTTCTCGGCCTGGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGt                                    <  2:437828/135‑1 (MQ=14)                                                                                                             gcgcGAATCTGTAGGCCTGATAGGCGTAGCGCATCAGGCATTTGTCACCTTTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTg                           <  2:153419/143‑1 (MQ=255)                                                                                                               gagaATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGt                         <  1:117776/143‑1 (MQ=255)                                                                                                                   aTCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATAGTAAGCCTGATAAGCGTAGCGCACCAGGCAGTCTGGCGTTGGTCAtc                     >  2:269642/1‑142 (MQ=255)                                                                                                                    tCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAATGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCCTCAGGCAGGCTGGCGTTGGTCATaa                    >  1:70743/1‑143 (MQ=255)                                                                                                                      tGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGACAGCCTTATTCGGCCCCCGACTGTAGCGTCCCGCTCACACCCGAGAAGCGTAGCGCATCAGGCACACTGGCGCTGGTCAGAAcc                  >  2:308304/1‑143 (MQ=2)                                                                                                                        tAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGCCTGGTAGGCCTGATACGCGTCGCGCATCCGGCAGGCTGGCGTTCGTCACAAcccc                >  2:444324/1‑143 (MQ=17)                                                                                                                        tAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAAcccc                >  1:578672/1‑143 (MQ=255)                                                                                                                        tAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGCAGCGCATCAGGCAGTCTGGCGTTGGTCATAAccgc                >  2:408830/1‑141 (MQ=255)                                                                                                                           gCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCAGGATGCGGCGTGAACGCCTTATCCGGCCAACGAAAGGCGCGAGAATGGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCACACGCAATAACCCCATc             >  2:615917/1‑143 (MQ=14)                                                                                                                                aTAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGGGGCGTGAACGCCTTATCCGGCCTACGGGTGGAGCGAGAATTGTAGGCCTGACAAGAGTGGCGCATCAGGCAGCCTGGCGGTGGTAGGACCCCCGTCACCct        >  2:163140/1‑143 (MQ=14)                                                                                                                                aTAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGCGTGGCGCGAGGATTGTAGGCCTGATAAGCGTAGAGCGTCAGGCAGACTGGAGGTGGTCAGAACGCCATAACCct        >  2:261898/1‑143 (MQ=17)                                                                                                                                     cgcaGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTAACCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTa   <  1:217902/140‑1 (MQ=255)                                                                                                                                      gtggcggATCAGGCATCTGCCACCGGTGCCGACTGCGGCGTGGTCGCTTAATCCGTCTAACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAg  <  2:642793/140‑1 (MQ=18)                                                                                                                                            |                                                                                                                                         CGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTCTGGCGTTGGTCATAACCCCATCACCCTCTGTAG  >  NC_000913/339876‑340151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.