New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2371623 =	41 (1.030)	3 (0.080)	3/276	5.8	7.2%	coding (718/1653 nt)	arnT	4‑amino‑4‑deoxy‑L‑arabinose transferase
	?	NC_000913	2371663 =	38 (0.980)					coding (758/1653 nt)	arnT	4‑amino‑4‑deoxy‑L‑arabinose transferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTACACAGGCTGGAAAAACCGCA  >  NC_000913/2371493‑2371764                                                                                                                                   |                                                                                                                                              gACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTc                                                                                                                                   >  1:502972/1‑143 (MQ=255)  aCGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGCGCGTATTCa                                                                                                                                  >  1:270193/1‑143 (MQ=255)    gCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTCTCGGGGTTAGGCCTACTCaaa                                                                                                                                >  2:487475/1‑142 (MQ=255)        aaccGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCtt                                                                                                                            <  1:447632/140‑1 (MQ=255)         aaCGCTGGAAAGATCTCTTTATTTGCGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCttt                                                                                                                           <  1:348753/143‑1 (MQ=255)          aCGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGTGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTg                                                                                                                          <  1:252179/143‑1 (MQ=255)          aCGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTg                                                                                                                          <  1:606141/143‑1 (MQ=255)            gCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGCCGATAGCGCAGCGGGAGACTAACTTCTGGCACTATTTTTTCCGCGTTGACGATCTTCAAccgcttgca                                                                                                                        >  2:509002/1‑135 (MQ=255)              tGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACt                                                                                                                      >  1:401657/1‑143 (MQ=255)                      tctgTTGATTTGCGGCTGGCTGCGGGTTGTCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTGTTCTGGGTTGAGCATATTCAACGCCTTGCACTGGatgatg                                                                                                              <  2:588880/143‑1 (MQ=255)                                    gcggggcggcGGTTATCGGGTGCGTACTGACGGTTCGTCCTGGGGGACTTGTGATAGCGCAGGGGGAGCCTCACTGCTGGCACGATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCt                                                                                                <  2:516289/136‑1 (MQ=255)                                     ctggctggCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAGCGTCTGGCACTATTTATTCTGCGTTGAGCATATGCAACGCTTTGCACTGGCTGATGCCCGACATCGCGCTc                                                                                               >  2:567446/1‑143 (MQ=255)                                        gctggcGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGCCTGCTCAGATTCAACGCTTTGCACTGGCTGATGCCCAACATAGAGCTCCGt                                                                                            >  1:475817/1‑143 (MQ=255)                                            gcGGTTATGAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTg                                                                                        <  2:644538/143‑1 (MQ=255)                                            gcGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTg                                                                                        <  2:517927/143‑1 (MQ=255)                                            gcGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTg                                                                                        <  2:502972/143‑1 (MQ=255)                                                ttATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCATCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGCTGATGCCCAACATAGAGCTCCCTTCTGGtgc                                                                                    >  1:365027/1‑141 (MQ=255)                                                ttATCAGTTGCGTACTGACGGTGCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGtac                                                                                    <  2:478258/143‑1 (MQ=255)                                                 caTCAGCTCCGTACTGACGGTCCTCCCTTGGGCACTGCCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGtact                                                                                   <  1:353207/142‑1 (MQ=255)                                                   tCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACGTCTGGCACTATTTTTTCTGGGCTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGtactac                                                                                 >  2:43190/1‑143 (MQ=255)                                                         tggTACTGACGGTTCTCCCTGGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCAGATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCg                                                                           <  2:194929/141‑1 (MQ=255)                                                         gCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCg                                                                           <  2:474774/143‑1 (MQ=255)                                                          ctgccTGACGGTTATGCCTGGGGGACTGGCGATAGGGTAGCGGGCGCCTAACAATTGCCAGTATGTTTTCTGGGTTGAGCATATTCATCGCTGTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCgg                                                                          <  2:417620/139‑1 (MQ=255)                                                             aCTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGAGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTGCTGGTACTACGTAccacgca                                                                       >  2:616266/1‑138 (MQ=255)                                                                      tcgccctctgggACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCg                                                              <  2:227965/134‑1 (MQ=255)                                                                                    tGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCCACATAGAGCTCCGTTCTGGTCCTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTgg                                                >  2:474914/1‑143 (MQ=255)                                                                                      gCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTCTTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTGGTCTGTCGCGGCt                                              >  2:125524/1‑143 (MQ=255)                                                                                          tAGCGCAGCGGGAGCCTATCTTCTGGCGCTATTTTTTCTGGCTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGa                                          <  2:501783/143‑1 (MQ=255)                                                                                                   gccaccccaaCTTCTGGACCTGCTTTTTCTGGGTTGAGCATCTTCAACGCTTTGCACTGGCTGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTcccc                                 <  1:123342/135‑1 (MQ=255)                                                                                                     gAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCgg                               <  1:688555/143‑1 (MQ=255)                                                                                                        tctgaCTTCTGGCACTCGTTGTGCTGGGTTGAGCAGAGTCAACGCCTTGCACTGGATGATGCCCAACATAGAGCTCCGTGGTGGTACTACGTGCCGGTCATCATTGCCAGTAGCCTGCCGTGGCTGGGATTACtactcgcggc                            <  2:120070/139‑10 (MQ=255)                                                                                                         cTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCa                           <  1:192876/143‑1 (MQ=255)                                                                                                         cTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGCCTGGGAATATCCCGCCGTGCa                           >  2:408678/1‑143 (MQ=255)                                                                                                         cTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCACGTCATCATTGCCGGTAGCCTGCCGTGGCTGGCATTACTCGCAGGTGCa                           >  2:179099/1‑143 (MQ=255)                                                                                                             cTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACGTGGAGCTCCGTTCTGGTACTACGTGCGGGGCATCATTGCCGGTAGCCTGCCGTGGCGGGGCGTGCTGCCCGGTCCCCTGt                       >  2:347220/1‑143 (MQ=255)                                                                                                              ttCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTa                      <  1:59498/143‑1 (MQ=255)                                                                                                              ttCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTa                      <  1:59492/143‑1 (MQ=255)                                                                                                                        aTTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCCACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGCTTACTCCCCGGTGCGCTGTCCGCAGGCTgg            >  1:273629/1‑143 (MQ=255)                                                                                                                            tttCTGGGTGTATCATAGTCAACGTTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCTGGTGCACTGTACACAGGCTGGaaaa        <  2:347192/143‑1 (MQ=255)                                                                                                                             ttCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCAGGTGCACCGGGCACAGGGTGTgaaaa       >  1:316080/1‑143 (MQ=255)                                                                                                                                  ggTTGAGCCTATGCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTCCTCCCCGGTGCACTGTACACAGGCTGGAAAAACCGCa  <  2:270193/143‑1 (MQ=255)                                                                                                                                   |                                                                                                                                              GACGCAAAAACGCTGGAAAGATCTCTTTATTTACGGCTGGCTGGCGGTTATCAGTTGCGTACTGACGGTTCTCCCTTGGGGACTGGCGATAGCGCAGCGGGAGCCTAACTTCTGGCACTATTTTTTCTGGGTTGAGCATATTCAACGCTTTGCACTGGATGATGCCCAACATAGAGCTCCGTTCTGGTACTACGTGCCGGTCATCATTGCCGGTAGCCTGCCGTGGCTGGGATTACTCCCCGGTGCACTGTACACAGGCTGGAAAAACCGCA  >  NC_000913/2371493‑2371764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.