New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	377368 =	NA (NA)	3 (0.080)	3/270	5.4	NA	noncoding (34/187 nt)	REP32 (repetitive extragenic palindromic) element, contains 4 REP sequences	REP32 (repetitive extragenic palindromic) element, contains 4 REP sequences
	?	NC_000913	2139702 =	NA (NA)					noncoding (1/37 nt)	REP146 (repetitive extragenic palindromic) element, contains 1 REP sequences	REP146 (repetitive extragenic palindromic) element, contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GCGCGCTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTACGGGCGAAGTGTAGGCCGGATAAGGCGTTCAC  >  NC_000913/377235‑377509                                                                                                                                        |                                                                                                                                                gcgcgcTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTa                                                                                                                                       <  2:577783/143‑1 (MQ=255) gcgcgcTCAGCGCAGAAGAGCAGGATGAGGACGACCCGTATGCCGACGTCAAAGTGCCTGATGATTTGATGTGGTAACCATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTa                                                                                                                                       <  2:72621/143‑1 (MQ=255)    cgcTCAGCGCAGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATgg                                                                                                                                    <  2:251020/143‑1 (MQ=255)       tCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCg                                                                                                                                 >  2:429842/1‑143 (MQ=255)       tCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCg                                                                                                                                 >  2:426881/1‑143 (MQ=255)        cAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGa                                                                                                                                >  1:205576/1‑143 (MQ=255)              cGAAGAGCAGGATGACGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTa                                                                                                                          <  2:166003/143‑1 (MQ=255)                    ggaGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCgg                                                                                                                    <  1:149999/141‑1 (MQ=255)                        gaggAAGACGACCCGTATGCCGCCTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATaa                                                                                                                <  2:531857/140‑1 (MQ=255)                              gacgacCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGAGtt                                                                                                          >  2:170758/1‑143 (MQ=255)                              gacgacCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCGAC‑GGGTTATGGGCGAAGTGTAGACCGGATAAGGCGtt                                                                                                          >  1:199250/1‑143 (MQ=255)                                    ccGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgcc                                                                                                    >  2:382645/1‑143 (MQ=255)                                     cGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCATGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCAcgccg                                                                                                   <  2:364270/143‑1 (MQ=255)                                           ccGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCg                                                                                             >  2:376472/1‑143 (MQ=255)                                            cGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCgg                                                                                            >  2:268861/1‑143 (MQ=255)                                             gACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGc                                                                                           >  2:101983/1‑143 (MQ=255)                                              aCTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                                          <  2:300142/143‑1 (MQ=255)                                                           tgatgaTTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCCATg                                                                            >  2:6123/1‑143 (MQ=255)                                                           tgatgaTTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTCACGGGCGACGGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCCacg                                                                            >  1:297630/1‑141 (MQ=255)                                                              tgagTTGATGTGGTAACCGTGGGTATGTCGTGCGCGGCTGCC‑T‑GCTGCGACGCTCTGCGCGTCTTATGTGGCCTAC‑GGTTGATGGGCGAAGTGTAGCCGGGAACATAGCCGCGTTTCGCATCCGGCAG‑TCGTGCGCCATGCCt                                                                         <  1:588209/143‑1 (MQ=255)                                                                atgtggcgggggacaCATAGATATGTCGTGCGCAGATGCCAG‑GACGTTTC‑CTATGCGCGTCTTATCGGGCCTAC‑GGTTTCTGGGAGAAGCATGTCCCGGATGAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCCATGCCTGa                                                                       <  1:620309/129‑1 (MQ=12)                                                                 tttGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCGAC‑GGTTTATGGGCGAAGTGGAGACCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCCTGCGCCGTGCCTGAt                                                                      >  2:253850/1‑143 (MQ=255)                                                                  ttGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCCTCCGGCAG‑TCGTGCGACGTACCTggtc                                                                     >  1:71494/1‑140 (MQ=21)                                                                   tgctgtgGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTGATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCCATGCCTGATGc                                                                    <  1:441379/140‑1 (MQ=255)                                                                          gTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTCCACGCCGCATCCGGCAG‑TCGTGCGCCCTGCCACATGCGACGCtt                                                             >  1:429145/1‑143 (MQ=255)                                                                                    gggcggtgggcgcAGACGGC‑TGGATGCGACGCAGAGCGCGTCTAAACATGCCTACAGGTGTGT‑GCCGAGCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTc                                                     <  1:557027/134‑1 (MQ=11)                                                                                    aTAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGAcc                                                                                                                      >  2:118906/1‑77 (MQ=255)                                                                                    aTAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGAcc                                                                                                                      <  1:118906/77‑1 (MQ=255)                                                                                          cctGCGCAGATGCC‑T‑GCTGCGCCGCTATGCGCGTCTTATCAGGCCTCC‑GGTTTATGGGCGAAGTGTAGCCCGGCTAAGGCGTTCCCGCCGCATCCGGCAG‑TCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAgg                                             <  1:500045/141‑1 (MQ=21)                                                                                                cAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCGTCCGGCAG‑TCGTGCGCCATGCCTGATGCGCCGCTTTGCGCGTCTTATCAGGCCTACg                                       >  2:446968/1‑143 (MQ=255)                                                                                                   aTGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCt                                    >  2:243950/1‑143 (MQ=255)                                                                                                       gccgggtGCGACGGGATGCGCGTCTGAGCAGGCCGAC‑GGTGGATGGGCGAAGCGTCGGCCGGATCAGGCGGTCACGCCGCATCCGGCAG‑TCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTa                                  <  1:133162/137‑1 (MQ=21)                                                                                                           gATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTACggc                              >  1:522575/1‑142 (MQ=255)                                                                                                              gctaCGCTATGCCCCTCTCATCACCCCCAC‑TCTTTATCGGCGCAGTGTAGCCCGGATAAGGCGTTCACGCCGCATCCGGCCG‑TCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTACGGGCGa                           <  2:78711/140‑1 (MQ=21)                                                                                                                gACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCCATGCCAGCTGCGACGCTTTGCGCGTCTTAGCCGGCCTACGGCTCACGGGCGAAg                         >  1:394880/1‑143 (MQ=25)                                                                                                                         cgcgTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTACGGGCGAAGTGTAGGCCg                <  2:534373/143‑1 (MQ=255)                                                                                                                             tCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCCATGCCTGGTGGGGTGCTTTGCGCGTCTTGTCGGGCTGCCGGCTGACGGGCGAAgtgggggtccgatc            >  1:439802/1‑132 (MQ=18)                                                                                                                             tCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTACGGTCGAAGTGTAGGCCGGAtg            >  2:355322/1‑142 (MQ=255)                                                                                                                                   cacgCCTAC‑TTTTTATGACCTAAGTTTAGACCATATAAGCCTTTCACGCCCCATCCTGCAT‑TCTTGCGCCATTCCTGATGCGACGCTTTTCGCGTCTTATCAGGCCTACGGCTTACGGGCGAAGTGTAGGCCGTATAAGGCGt      <  1:245994/140‑1 (MQ=18)                                                                                                                                       ccTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCACATCCGGCAG‑TCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTACGGGCGAAGTGTAGGCCGGATAAGGCGTTCAc  <  2:663396/143‑1 (MQ=255)                                                                                                                                        |                                                                                                                                                GCGCGCTCAGCGCCGAAGAGCAGGATGAAGACGACCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCC‑T‑GATGCGACGCTATGCGCGTCTTATCAGGCCTAC‑GGTTTATGGGCGAAGTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAG‑TCGTGCGCCATGCCTGATGCGACGCTTTGCGCGTCTTATCAGGCCTACGGCTTACGGGCGAAGTGTAGGCCGGATAAGGCGTTCAC  >  NC_000913/377235‑377509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.