Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 44 [0] [0] 44 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)40 (1.120) 31/264 0.1 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

ACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815716‑3815999
                                                                                                                                              |                                                                                                                                              
acacCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCc                                                                                                                                               <  2:576090‑M1/143‑2 (MQ=255)
  tcctGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTTATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgt                                                                                                                                             <  1:125099‑M1/142‑4 (MQ=255)
     tgcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                                                                          <  2:423333‑M1/143‑7 (MQ=255)
     tgcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCCTCGCTCCTCTTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccc                                                                                                                                          <  2:383488‑M1/143‑7 (MQ=255)
      gcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTACCAGCGCCGCCTTCTGCcgtcccc                                                                                                                                         >  1:421834‑M1/1‑136 (MQ=255)
       cttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccct                                                                                                                                        <  1:546495‑M1/143‑9 (MQ=255)
          gctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgca                                                                                                                                     <  1:150470‑M1/143‑12 (MQ=255)
            tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTACcgtaccctgcact                                                                                                                                   >  1:565552‑M1/1‑130 (MQ=255)
                 gcAAATTCAATAAACTGTCGCTTATATGGTGTCATGCCTTCGCTCCTCATCTTACTATTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaat                                                                                                                              <  1:326053‑M1/143‑19 (MQ=255)
                                 ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                              <  2:101001‑M1/143‑35 (MQ=255)
                                 gccgctgATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcg                                                                                                              <  2:202626‑M1/141‑35 (MQ=255)
                                    gcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatcatgcgcccgtcttcggcc                                                                                                           >  2:457353‑M1/1‑106 (MQ=255)
                                    gcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACGGTTCTACAGACAAAAAAAAGGCGACTCATCAGTGGCCTTAAAAATCGGTTTGCCAGCGCGGCCTTCAGCgatcccctgcactccaatggtgcgccctgcgtcgctc                                                                                                           >  1:287303‑M1/1‑106 (MQ=255)
                                           tGGTATCATGCCTTCGCTCCGCATCTTACGTGTCTACAGACAAAAAAAAGGCGACTCAGCAGTCGCCTTAAAAATCAGTCTGCCAGCGCTGCGTTCGGCtggcccctgcacttcaatgatgcgcccgtcttcggtcatcacta                                                                                                    <  1:300737‑M1/143‑45 (MQ=255)
                                            ggTTTCATGCCTGCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactac                                                                                                   <  2:377094‑M1/143‑46 (MQ=255)
                                              tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAACAAGGCGCCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcctccggcaccaccacgt                                                                                                 >  1:158451‑M1/1‑96 (MQ=255)
                                                      cTTCGCACCTCATCTTACTTCTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaaagaagcgcccgtcttcggtcatcactacgttcatgtcg                                                                                         <  1:609204‑M1/143‑56 (MQ=255)
                                                             cctcATCTTACTTTTCTACAGACAAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtacct                                                                                   >  1:173007‑M1/1‑82 (MQ=255)
                                                               taatcTTACTGTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttccatgatgcgcccgacttcggtcctcactacgctcatgtcggtctctgcg                                                                                >  1:174073‑M1/3‑79 (MQ=255)
                                                                  tCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccactgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtgtctgcggca                                                                             >  2:362791‑M1/1‑76 (MQ=255)
                                                                   cTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcag                                                                            >  2:424829‑M1/1‑75 (MQ=255)
                                                                    ttcctttTCTACAGGCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTCTGCCAGCGCCGCCTTCTGCcggcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga                                                                           <  2:13247‑M1/140‑70 (MQ=255)
                                                                        ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtctcctgcacttcaatgatccgcccgtcttccgtcaccgctacgttccttgcggtccccgcggccgccact                                                                       >  2:204227‑M1/1‑70 (MQ=255)
                                                                        ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctccgcggcagcgtcc                                                                       >  2:272409‑M1/1‑70 (MQ=255)
                                                                        ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacggtcatgtcgctctctgccgcagaggcg                                                                       >  1:345649‑M1/1‑70 (MQ=255)
                                                                        ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctccggtcctcactacgttcatgtcgcgctctgcggcagagtct                                                                       >  1:377732‑M1/1‑70 (MQ=255)
                                                                          ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagccttc                                                                     >  2:529669‑M1/1‑68 (MQ=255)
                                                                            ctacctacaaaaaAAAGGCGACTCATCAGTCGCCTTAAAAAGCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaa                                                                   <  2:450975‑M1/137‑78 (MQ=255)
                                                                            cTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtccatgtcggtctctgcggcagggtcttcaa                                                                   >  2:155194‑M1/1‑66 (MQ=255)
                                                                             tACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcacc                                                                  >  1:304666‑M1/1‑65 (MQ=255)
                                                                                aGACAAAAAAAGGGCGACGCATCGGGCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgta                                                               <  1:230119‑M1/143‑82 (MQ=255)
                                                                                      tttttaaggcgaCTGATGAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggccatcactacgctcatgtcggtctctgcggcggtgtcttcaacgtactcca                                                          >  2:97942‑M1/6‑57 (MQ=255)
                                                                                      ataaaaaggCGCCTCATCAGTCGCCTTAATGATCCGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcca                                                          <  1:72215‑M1/141‑87 (MQ=255)
                                                                                         aaacGGCGCCTCATCTCTCGCCTTAAACATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgctgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat                                                       <  1:318677‑M1/143‑90 (MQ=255)
                                                                                          aaaGGCGATTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatc                                                      <  1:537119‑M1/143‑91 (MQ=255)
                                                                                          aaaGGCGACTCATCAGTCGTGTTAGAGTTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatc                                                      <  2:519086‑M1/143‑91 (MQ=255)
                                                                                                gACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagcattcaacgcattccagatcgcaaac                                                >  1:53127‑M1/1‑47 (MQ=255)
                                                                                                         gTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggccgagtcttcaacgtattccagatcgcaaaccgcttcccc                                       >  2:166901‑M1/1‑38 (MQ=255)
                                                                                                               ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcac                                 >  2:403868‑M1/1‑32 (MQ=255)
                                                                                                                               cAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcaccattccgccagaaact                 >  2:657375‑M1/1‑16 (MQ=255)
                                                                                                                                     cgctTTCTGCtgtcccctgcacttcaatgatgcgcacgtattcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggct           <  2:287303‑M1/143‑134 (MQ=255)
                                                                                                                                     cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgggcctcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagagcgcaaaccgctgcgccgtctccacttccgccagaacctggggcg           >  1:290416‑M1/1‑10 (MQ=255)
                                                                                                                                       ccTTCTGCcgtcccatgcacttcagtgatggtcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctac         <  1:217929‑M1/143‑136 (MQ=255)
                                                                                                                                              ccgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcacaccgcttcgccgttcacaattccgacagaaactgcggctaccatccct  >  1:646324‑M1/1‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                              
ACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815716‑3815999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.