New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 258674	NA (NA)	37 (0.750)	32/280	0.5	100%	intergenic (+775/‑2)	crl/crl	pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
	?	NC_000913	1306931 =	0 (0.000)					coding (220/330 nt)	yciU	UPF0263 family protein

CGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258535‑258674 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCG  >  NC_000913/1306931‑1307070                                                                                                                                                                                                                                                                                          CGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGCACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCCAAAACACCGTCATACACTAAATCGGTAAGTTGGCAGCATCACCCA                                                                                                                                           >  2:671352/1‑143         TCCGGCGGTGCGTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCA                                                                                                                                   <  2:307109/143‑1          CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCAGCATACACTAAATCAGTAAGTTGGCAGCATCACCCcatcagggaa                                                                                                                                  >  2:439849/1‑133                    ggTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACTCCATCATACACGAGATAAGTAAGTTGGCGGCATCACCCACTTCGGCAAAAAAGTCCGG                                                                                                                        <  1:718846/141‑1                       TGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTT                                                                                                                     <  2:418368/143‑1                         CCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCA                                                                                                                   >  2:518748/1‑143                           gttcagccaCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAA                                                                                                                 <  2:616389/134‑1                                  ACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCGAGACAGTCCGGGTTCAAATCGACAT                                                                                                          >  2:218293/1‑143                                    CACCCCGGCAGTAGATGAAGAGGAGGGACAGATGAGAGAAACAGAAGCCACTGAAGCACCACAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCA                                                                                                        <  1:526104/143‑1                                          GTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGT                                                                                                  <  2:532538/143‑1                                                AGCTGAACAGGAGGGACAGCTGAGAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGC                                                                                            <  1:369123/143‑1                                                 GCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCGCTGGAGCACCTCAAAAACACCATCATACACTAAAGCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCC                                                                                           <  1:393605/143‑1                                                              GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGG                                                                              <  2:864776/143‑1                                                               ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAAAATGTACAAACCAGTCTTCCGCCGGA                                                                             >  2:361252/1‑143                                                                    TGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAA                                                                        <  2:701511/143‑1                                                                    TGATAGAAACAGAAGCCACTGGAGCACCCCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAA                                                                        <  1:681562/143‑1                                                                                  GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGC                                                          >  2:520640/1‑143                                                                                    CACTGTAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTGCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCG                                                        <  1:539942/143‑1                                                                                         GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTACGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTC                                                   >  2:449510/1‑143                                                                                            CACGTCAAAAACACCATCATACACTAGAGCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTC                                                <  1:363056/143‑1                                                                                              CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGGATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCTGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAA                                              >  2:606259/1‑143                                                                                               cgCAAAGACACGATCATACTGTGCAGCAGTAAGTTGGCCGCAGCACCCACTTCGGCAAAAAAGTCCGGGTTCAAAGCGAAATCAACAGGTTCCTGCCAGTCGTCCGCCGGACCGAATAACTCCGCGCCGCCGCGCTCTTCAAA                                             <  1:125350/141‑1                                                                                               CTCAAAAACACCATCACCCACGTAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAA                                             <  2:26185/143‑1                                                                                                TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAGCTCCGCGCCGCCGCGCTCTTCAGAC                                            >  2:541799/1‑143                                                                                                TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCACAC                                            >  2:218060/1‑143                                                                                                TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAAC                                            <  2:642500/143‑1                                                                                                     AACCCCATCATACACTAAAGCAGTAAGCTGGCAGCATCACCCACTTCAGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAG                                       <  2:665383/143‑1                                                                                                      ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCGGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGA                                      <  2:620651/143‑1                                                                                                        gCCAGCATACACTGAAGCAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATT                                    <  2:608739/142‑1                                                                                                                 cctcAAATCAGTAAGTTGGCTGCAGCGCCCATGTCGGCAAAAGTGTCCGGGTTCAAGTCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAG                           <  1:748046/139‑1                                                                                                                         CAGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCGGAACATCAG                   <  2:542469/143‑1                                                                                                                          AGTAAGTTGGCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGC                  <  1:368738/143‑1                                                                                                                            ttgggTGGCAGGATCAGCCGCTTCGGCAAAAGAGTCCGGGTGCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCGGGATCGAGTAACGCCGCGCCGCAGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTG                <  1:32366/138‑1                                                                                                                                   GCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGCAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAG         <  2:303147/143‑1                                                                                                                                   GCAGCATCACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGAgtgag         >  2:438999/1‑138                                                                                                                                        ATCGCCCACTTCGGCAAACAAGTCCGGGGTCAAATGGAACTCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGT    <  1:118623/143‑1                                                                                                                                          CACCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGACATCAACAGGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCG  <  2:279424/143‑1                                                                                                                                                                                                                                                                                          CGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/258535‑258674 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCG  >  NC_000913/1306931‑1307070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.