| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258674 | NA (NA) | 37 (0.750) | 32/280 | 0.5 | 100% | intergenic (+775/‑2) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 1306931 = | 0 (0.000) | coding (220/330 nt) | yciU | UPF0263 family protein | |||||
TCAGCCCTTTTTCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGG > NC_000913/1306791‑1307071 | cgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgcacaggagggacagctgatagaaacagaagccactggagcacctccaaaacaccgtcatacactaaatcggtaagttggcagcatcacCCa > 2:671352‑M2/141‑143 (MQ=255) tccggcggtgcgtttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCa < 2:307109‑M2/11‑1 (MQ=255) ccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccagcatacactaaatcagtaagttggcagcatcaccccatcagggaa > 2:439849‑M2/132‑133 (MQ=255) ggttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaactccatcatacacgagataagtaagttggcggcatcacCCACTTCGGCAAAAAAGTCCgg < 1:718846‑M2/22‑1 (MQ=255) tgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGtt < 2:418368‑M2/25‑1 (MQ=255) ccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCa > 2:518748‑M2/117‑143 (MQ=255) gttcagccacaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCaaa < 2:616389‑M2/29‑1 (MQ=255) accaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCGAGACAGTCCGGGTTCAAATCGACAt > 2:218293‑M2/108‑143 (MQ=255) caccccggcagtagatgaagaggagggacagatgagagaaacagaagccactgaagcaccacaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCa < 1:526104‑M2/38‑1 (MQ=255) gtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGt < 2:532538‑M2/44‑1 (MQ=255) agctgaacaggagggacagctgagagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGc < 1:369123‑M2/50‑1 (MQ=255) gctgaacaggagggacagctgatagaaacagaagccgctggagcacctcaaaaacaccatcatacactaaagcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGcc < 1:393605‑M2/51‑1 (MQ=255) gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCgg < 2:864776‑M2/64‑1 (MQ=255) acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAAAATGTACAAACCAGTCTTCCGCCGGa > 2:361252‑M2/79‑143 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGaa < 2:701511‑M2/70‑1 (MQ=255) tgatagaaacagaagccactggagcaccccaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGaa < 1:681562‑M2/70‑1 (MQ=255) gccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGcgccgc > 2:520640‑M2/60‑143 (MQ=255) cactgtagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTGCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGcgccgccg < 1:539942‑M2/86‑1 (MQ=255) gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTACGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGctc > 2:449510‑M2/53‑143 (MQ=255) cacgtcaaaaacaccatcatacactagagcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTc < 1:363056‑M2/94‑1 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcaggatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCTGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCaa > 2:606259‑M2/48‑143 (MQ=255) ctcaaaaacaccatcacccacgtaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCaaa < 2:26185‑M2/97‑1 (MQ=255) cgcaaagacacgatcatactgtgcagcagtaagttggccgcagcacCCACTTCGGCAAAAAAGTCCGGGTTCAAAGCGAAATCAACAGGTTCCTGCCAGTCGTCCGCCGGACCGAATAACTCCGCGCCGCCGCGCTCTTCaaa < 1:125350‑M2/97‑1 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAGCTCCGCGCCGCCGCGCTCTTCAGAc > 2:541799‑M2/46‑143 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCacac > 2:218060‑M2/46‑143 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAAc < 2:642500‑M2/98‑1 (MQ=255) aaccccatcatacactaaagcagtaagctggcagcatcacCCACTTCAGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAg < 2:665383‑M2/103‑1 (MQ=255) acaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCGGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGa < 2:620651‑M2/104‑1 (MQ=255) gccagcatacactgaagcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGAtt < 2:608739‑M2/106‑1 (MQ=255) cctcaaatcagtaagttggctgcagcgcCCATGTCGGCAAAAGTGTCCGGGTTCAAGTCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAAcagcag < 1:748046‑M2/115‑1 (MQ=255) cagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCGGAACATCAg < 2:542469‑M2/123‑1 (MQ=255) agtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGc < 1:368738‑M2/124‑1 (MQ=255) ttgggtggcaggatcagCCGCTTCGGCAAAAGAGTCCGGGTGCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCGGGATCGAGTAACGCCGCGCCGCAGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTg < 1:32366‑M2/126‑1 (MQ=255) gcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGCAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCgag < 2:303147‑M2/133‑1 (MQ=255) gcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAgctggagtgag > 2:438999‑M2/11‑138 (MQ=255) atcgcCCACTTCGGCAAACAAGTCCGGGGTCAAATGGAACTCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGt < 1:118623‑M2/138‑1 (MQ=255) cacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGACATCAACAGGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCg < 2:279424‑M2/140‑1 (MQ=255) acccacTTCGGCAAAAAAAGGCGGGTTCAAATCGAAATCAACATGTTACTGCCAGTCTTACGCCGGATCGAATAAATCCGCGCCGCCGCGCACCTCAAACTGAAGATTGAACAGCAGAAACGCACCTGGATAGAGATTGGCgc > 1:314856/3‑142 (MQ=255) | TCAGCCCTTTTTCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGG > NC_000913/1306791‑1307071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |