New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 258674NA (NA)37 (0.750) 32/280 0.5 100% intergenic (+775/‑2) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913 1306931 = 0 (0.000)coding (220/330 nt) yciU UPF0263 family protein

TCAGCCCTTTTTCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGG  >  NC_000913/1306791‑1307071
                                                                                                                                            |                                                                                                                                            
cgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgcacaggagggacagctgatagaaacagaagccactggagcacctccaaaacaccgtcatacactaaatcggtaagttggcagcatcacCCa                                                                                                                                            >  2:671352‑M2/141‑143 (MQ=255)
        tccggcggtgcgtttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCa                                                                                                                                    <  2:307109‑M2/11‑1 (MQ=255)
         ccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccagcatacactaaatcagtaagttggcagcatcaccccatcagggaa                                                                                                                                   >  2:439849‑M2/132‑133 (MQ=255)
                   ggttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaactccatcatacacgagataagtaagttggcggcatcacCCACTTCGGCAAAAAAGTCCgg                                                                                                                         <  1:718846‑M2/22‑1 (MQ=255)
                      tgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGtt                                                                                                                      <  2:418368‑M2/25‑1 (MQ=255)
                        ccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCa                                                                                                                    >  2:518748‑M2/117‑143 (MQ=255)
                          gttcagccacaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCaaa                                                                                                                  <  2:616389‑M2/29‑1 (MQ=255)
                                 accaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCGAGACAGTCCGGGTTCAAATCGACAt                                                                                                           >  2:218293‑M2/108‑143 (MQ=255)
                                   caccccggcagtagatgaagaggagggacagatgagagaaacagaagccactgaagcaccacaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCa                                                                                                         <  1:526104‑M2/38‑1 (MQ=255)
                                         gtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGt                                                                                                   <  2:532538‑M2/44‑1 (MQ=255)
                                               agctgaacaggagggacagctgagagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGc                                                                                             <  1:369123‑M2/50‑1 (MQ=255)
                                                gctgaacaggagggacagctgatagaaacagaagccgctggagcacctcaaaaacaccatcatacactaaagcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGcc                                                                                            <  1:393605‑M2/51‑1 (MQ=255)
                                                             gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCgg                                                                               <  2:864776‑M2/64‑1 (MQ=255)
                                                              acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAAAATGTACAAACCAGTCTTCCGCCGGa                                                                              >  2:361252‑M2/79‑143 (MQ=255)
                                                                   tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGaa                                                                         <  2:701511‑M2/70‑1 (MQ=255)
                                                                   tgatagaaacagaagccactggagcaccccaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGaa                                                                         <  1:681562‑M2/70‑1 (MQ=255)
                                                                                 gccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGcgccgc                                                           >  2:520640‑M2/60‑143 (MQ=255)
                                                                                   cactgtagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTGCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGcgccgccg                                                         <  1:539942‑M2/86‑1 (MQ=255)
                                                                                        gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTACGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGctc                                                    >  2:449510‑M2/53‑143 (MQ=255)
                                                                                           cacgtcaaaaacaccatcatacactagagcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTc                                                 <  1:363056‑M2/94‑1 (MQ=255)
                                                                                             cctcaaaaacaccatcatacactaaatcagtaagttggcaggatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCTGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCaa                                               >  2:606259‑M2/48‑143 (MQ=255)
                                                                                              ctcaaaaacaccatcacccacgtaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCaaa                                              <  2:26185‑M2/97‑1 (MQ=255)
                                                                                              cgcaaagacacgatcatactgtgcagcagtaagttggccgcagcacCCACTTCGGCAAAAAAGTCCGGGTTCAAAGCGAAATCAACAGGTTCCTGCCAGTCGTCCGCCGGACCGAATAACTCCGCGCCGCCGCGCTCTTCaaa                                              <  1:125350‑M2/97‑1 (MQ=255)
                                                                                               tcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAGCTCCGCGCCGCCGCGCTCTTCAGAc                                             >  2:541799‑M2/46‑143 (MQ=255)
                                                                                               tcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCacac                                             >  2:218060‑M2/46‑143 (MQ=255)
                                                                                               tcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAAc                                             <  2:642500‑M2/98‑1 (MQ=255)
                                                                                                    aaccccatcatacactaaagcagtaagctggcagcatcacCCACTTCAGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAg                                        <  2:665383‑M2/103‑1 (MQ=255)
                                                                                                     acaccatcatacactaaatcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCGGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGa                                       <  2:620651‑M2/104‑1 (MQ=255)
                                                                                                       gccagcatacactgaagcagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGAtt                                     <  2:608739‑M2/106‑1 (MQ=255)
                                                                                                                cctcaaatcagtaagttggctgcagcgcCCATGTCGGCAAAAGTGTCCGGGTTCAAGTCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAAcagcag                            <  1:748046‑M2/115‑1 (MQ=255)
                                                                                                                        cagtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCGGAACATCAg                    <  2:542469‑M2/123‑1 (MQ=255)
                                                                                                                         agtaagttggcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGc                   <  1:368738‑M2/124‑1 (MQ=255)
                                                                                                                           ttgggtggcaggatcagCCGCTTCGGCAAAAGAGTCCGGGTGCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCGGGATCGAGTAACGCCGCGCCGCAGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTg                 <  1:32366‑M2/126‑1 (MQ=255)
                                                                                                                                  gcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGCAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCgag          <  2:303147‑M2/133‑1 (MQ=255)
                                                                                                                                  gcagcatcacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAgctggagtgag          >  2:438999‑M2/11‑138 (MQ=255)
                                                                                                                                       atcgcCCACTTCGGCAAACAAGTCCGGGGTCAAATGGAACTCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGt     <  1:118623‑M2/138‑1 (MQ=255)
                                                                                                                                         cacCCACTTCGGCAAAAAAGTCCGGGTTCAAATCGACATCAACAGGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCg   <  2:279424‑M2/140‑1 (MQ=255)
                                                                                                                                          acccacTTCGGCAAAAAAAGGCGGGTTCAAATCGAAATCAACATGTTACTGCCAGTCTTACGCCGGATCGAATAAATCCGCGCCGCCGCGCACCTCAAACTGAAGATTGAACAGCAGAAACGCACCTGGATAGAGATTGGCgc  >  1:314856/3‑142 (MQ=255)
                                                                                                                                            |                                                                                                                                            
TCAGCCCTTTTTCACGCTAAAAGCGATTATTTATTCCCGCCAGATGATATGGCAAAGTTTGTGATCTTTTTCGCGGCATAACAGAATGCGGGCAAAAACATCGTTGATTTCACCATCTTCACTGTCCGCCAGACCAATCACCACTTCGGCAAAAAAGTCCGGGTTCAAATCGAAATCAACATGTTCCTGCCAGTCTTCCGCCGGATCGAATAACTCCGCGCCGCCGCGCTCTTCAAACTGAAGATTGAACAGCAGAACATCAGCTGGATCGAGATTGTCGG  >  NC_000913/1306791‑1307071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.