| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 609347 | NA (NA) | 40 (0.820) | 35/274 | 0.3 | 97.6% | intergenic (+170/+112) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
| ? | NC_000913 | 1491900 = | 1 (0.020) | intergenic (+50/+22) | ydcA/hokB | putative periplasmic protein/toxic polypeptide, small | |||||
ATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATggga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/609206‑609347‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCGGAAC‑CGCAGTTCGTAGAGCGTTTGTCGGGTCAGGAGTGTGAATGTCAGAATCGTAATGCAGATAATGAG > NC_000913/1491900‑1492041 ATCTGGAGTTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCATCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATG < 2:74707/143‑1 TCTGGTGCTTACAGGTGGCCATTCGTTGGACAGTATCCCTGACAGCCTGCAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGCTGGCTCAACCCAGAAGTTAGCGCTTATGG < 1:677072/143‑1 CTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTACGTTAGCGCCTACGGc > 1:270250/1‑142 CTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGG > 2:865240/1‑143 gGGAGCTTACGGGTGGCCATCCCTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGA < 1:87219/142‑1 TGGGGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGA < 2:711424/143‑1 TGGAGCTTACAGGTGGCCATTCGTGGGGCAGGATCCCTGACAGCCTACAAAGCGCAATTGAAGAACGCGATGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCAACCGCAAGTACGACCCTTAAGTTAGCGCTTAGGGGA < 1:771195/143‑1 TGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGA < 2:682163/143‑1 TGGAGCTTACAGGTGGCCATGCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGA < 2:127917/143‑1 CTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGACGCACGCGCGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTGCAGCTGGTTCAACCCTTAAGGTAGCGCTTATGGGAAAcgc > 1:690854/1‑140 ATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGCGGCGTCGCATTCTTCAGATGGTTCACCCCTTACGTTAGCGCTTATGGGACACTCCCCGCGCTTGCCC > 2:262530/1‑143 ATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTCAGTTAGCGCCTATGCGAAAATGCCCGCGCTTACCC > 1:508391/1‑143 TGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGCAAATCCCCGCGCTTGCCCTTACC > 1:800615/1‑143 GACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACACTAAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTCCCTGG > 1:473274/1‑143 CAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGAC < 2:271135/143‑1 TCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCA < 2:432440/143‑1 CCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAG < 1:157425/143‑1 CCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGG > 2:18692/1‑143 TGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGCAAAATCCGCGACCTTGCCCTTACCTGTACGTGCAGGCC > 2:682767/1‑143 GACAGCCCGCCATACGCAGTTGAAGACCGCGAGGCACCGTCGTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCA < 1:508040/143‑1 AGCCGACAAAGCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGA < 2:777620/143‑1 ACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTCAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCA < 1:720307/143‑1 ACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAAC < 2:694831/143‑1 ACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAAC < 2:108727/143‑1 GCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATCAGCGCAGCAACCT > 2:284066/1‑143 GCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTGCAACCCTTAAGTTAGCGCTTATGGGAAGATCCCCGCGCTTGCCCGTACCTGCACGTGCCGGCCATGAGCGCAGCAACCT > 2:715727/1‑143 AATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCC > 2:449645/1‑143 AATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCC > 2:435927/1‑143 ATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCT > 2:742796/1‑143 cgtcGCATCGTCTTAGAGAGGCACCGGGGCCTCGCATTCGTCATATGCTTCAACCCTTAAGTTAGCGCTTAGGTGATTTTCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCC < 1:530534/139‑1 gGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCACCCCTTAAGTTAGCGCTTATGGGAAACTCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCG < 1:179107/142‑1 atGCATCGTCGTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATATTCCCCTCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCG < 2:421904/141‑1 AGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCG > 2:368016/1‑143 GGCATCGTCTTAACGAGGCACCGAGGCGTCGAATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCAGGACGTGCAGGCCATGAGCGAAGCAACCTCATTATAACCGTCCCGa > 1:331600/1‑142 TCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTGCCGTGGACACGCAGGCAATGAGCGCAGCAACCTCCTTATCACCGTCCCGGcccc > 1:347559/1‑139 GAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGCGCGCAGCGACCGCCTTATGACCGTGCCGGGAC‑CGCAGTGCGag > 2:298237/1‑141 caaGCGTCGCATTCTTCAGATGGTTCAACCCATAAGTTAGCGCGGATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCGGAAC‑CGCAGTTCGTAGAGCGTTT < 2:112932/140‑1 TCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAAAAAACGAGATTGCATTTGCCTGGAAGTGAAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCGGAAC‑CGCAGTTCGTAGAGCGTTTGTCGGG > 2:369359/1‑143 TTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAAGCCAGGAGCGACGCAACCTCCTTATCACCGTCCCGGAAC‑CGCAGTTCGTAGCGCGTACGACGGGTCGGG > 1:528440/1‑143 TTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGAGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCGGAAC‑AGCAGTTAGTAGAGCGTGCGTCGGGCCAGGAGa > 1:682277/1‑142 AGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCGGAAC‑CGCAGTTCGTAGAGCGTTTGTCGGGTCAGGAGTGTG > 2:176422/1‑143 GATGGTTCAACCCTTAAGTTAGCGCTGATGGGAAAAGCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCGGAAC‑CGCAGTTCGTAGAGCGTTTGTCGGGCCAGGATTGTGA < 1:191232/143‑1 ATGGTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCGGAAC‑CGCAGTTCGTAGAGCGTTTCTCGGGTCAGGAGTGTGAA > 2:751534/1‑143 GTTCAACCCTTAAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCCTGAGCGCAGCAACCTCCTCATCACCGTTCCGGCACTTGTAG‑TCGTAGAGCGTTTGTCGGGTCAGGCGTGTGAATGT > 2:73927/1‑143 AAGTTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCGGAAC‑CGCAGTTCGTAGAGCGTTTGTCGGGTCAGGAGTGTGAATGTCAGAATCGTAA < 2:464193/143‑1 TTAGCGCTTATGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCGGAAC‑CGCAGTTCGTCGAGCGTTTGTCGGGTCAGGCGTGCGAATGTCAGAATCGTACTGC > 2:697503/1‑143 TTAGCGCTTATGGGAAAATCCCCGCGCTCGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCGGAAC‑CGCAGTTCGTAGAGCGTTTGTCGGGTCAGGAGTGTGAATGTCAGAATCGTAATGC < 2:19926/143‑1 ATGGGAAAAGCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCGGAAC‑CGCAGTTCGTAGAGCGTTTGTCGGGTCAGGAGTGTGAATGTCAGAATCGTAATGCAGATAATGA < 2:542579/143‑1 TGGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCGGAAC‑CGCAGTTCGTAGAGCGTTTGTCGGGTCAGGAGTGTGAATGTCAGAATCGTAATGCAGATAATGAG < 2:347559/143‑1 ATCTGGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATggga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/609206‑609347‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGAAAATCCCCGCGCTTGCCCTTACCTGGACGTGCAGGCCATGAGCGCAGCAACCTCCTTATCACCGTCCCGGAAC‑CGCAGTTCGTAGAGCGTTTGTCGGGTCAGGAGTGTGAATGTCAGAATCGTAATGCAGATAATGAG > NC_000913/1491900‑1492041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |