New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 609347	NA (NA)	40 (0.820)	35/274	0.3	97.6%	intergenic (+170/+112)	insL1/entD	IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
	?	NC_000913	1491900 =	1 (0.020)					intergenic (+50/+22)	ydcA/hokB	putative periplasmic protein/toxic polypeptide, small

GGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACT  >  NC_000913/609210‑609486                                                                                                                                           |                                                                                                                                            ggAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTACGGGAg                                                                                                                                        >  2:193685/1‑143 (MQ=11)       tACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATcc                                                                                                                                  <  1:680417/143‑1 (MQ=35)         cAGGTGGCCATTCGTGCGACACTATCCCTGACAGCCCACAAACCGCAATTGCAGAACGCGAGGCATCGTCTTAACGAGCCACCGAGGCGTCCCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATcccc                                                                                                                                <  2:393035/143‑1 (MQ=11)           ggTGGCCATTCGTGGGACAGTATCCCGGACAGCCTACAAGACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGc                                                                                                                              <  1:837619/143‑1 (MQ=255)            gTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGACGCATTCTTCAGATGGTT‑CAACCCTGACGTTAGCGCTTATGGGCGTAACCCCAGCa                                                                                                                             >  1:383814/1‑143 (MQ=11)                  atgcGTGGGACAGTATCCCTGACAGCTTAAATGCCCGAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCg                                                                                                                       <  2:681733/140‑1 (MQ=14)                     cGTGGGACAGTATCCCTGACAGCCTACACAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGtt                                                                                                                    <  2:180946/143‑1 (MQ=255)                      gTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCTTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAGGTTAGCGCTTATGGGAGTGATCCCCGCATATCCGGtag                                                                                                                   >  2:36608/1‑141 (MQ=255)                        gggACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGCGGCACCGAGCCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTCGCGCTTATGGGAGTCATCCCCGCATATCCGGtcgcc                                                                                                                 >  2:749287/1‑139 (MQ=14)                         ggACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgtca                                                                                                                <  2:522117/143‑1 (MQ=255)                                   ccTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCAGTCTTCAGATGGTT‑CAACCCTTCAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCTGGATg                                                                                                      <  1:730559/143‑1 (MQ=255)                                    cTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGTGTGTAATCACCGCATATCCGGTTGTCAGGTCAGGATgg                                                                                                     >  2:784102/1‑143 (MQ=255)                                           ccTACAAAACGCAATTGAAGAACGCGAAGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCa                                                                                              >  1:224650/1‑143 (MQ=255)                                            cTACAAAAGGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGGT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATCGTGAGGCAc                                                                                             <  1:152340/143‑1 (MQ=255)                                             tACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCAcc                                                                                            >  1:412017/1‑143 (MQ=255)                                               cAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCCGGATGGTAAGGCACCTg                                                                                          >  2:394916/1‑143 (MQ=255)                                                  gctggaagtGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTGAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCtt                                                                                       <  1:781062/135‑1 (MQ=255)                                                      ccatcgaagaaCGCGAGGCATCGTCGTAACGAGGCACCGAGGCGTCGCTTTCCTCACAAGATT‑CAACCCTTAAGGTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTaca                                                                                   <  2:874006/138‑1 (MQ=21)                                                         ttGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAACCCCCGCATCTCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACtt                                                                                >  2:513264/1‑143 (MQ=255)                                                           taatttcgcgttgCATCGTCTTAATTTGGTACCGAGGCGTCGTATTCTTCAGATGGTT‑CAACCCTTATGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGATCAGGATGGTACGGCACCTGCTTTACACTTTc                                                                              <  1:457990/131‑1 (MQ=21)                                                           gaagaaCGCGAGGCATCTTCGTAACCAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGCTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGTTCAGGATGGTAAGGCACCTGCTTTACACTTTc                                                                              <  1:455372/143‑1 (MQ=25)                                                            aagaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCCGGCTGGTAAGGCACCTGCTTTACACTTTCg                                                                             >  2:851161/1‑143 (MQ=255)                                                             agaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGCCAGGTCAGGACGGTAAGGCACCCGCTTCACACTTTCGc                                                                            >  1:194365/1‑143 (MQ=255)                                                                  gcgAGGCATCGTCTTACGTAGGCACCGAGGTGTCGCATGCCTCAGATGGTT‑CACCCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTg                                                                       <  1:502352/143‑1 (MQ=25)                                                                  gcgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTg                                                                       <  2:462133/143‑1 (MQ=255)                                                                    gAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGCAAGGCACCTGCTTTACACTTTCGCCCGTGGt                                                                     >  1:870769/1‑143 (MQ=255)                                                                      ggccgcgtcgtAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCGTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCa                                                                   <  1:331081/138‑1 (MQ=255)                                                                            gTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATg                                                             <  2:423959/143‑1 (MQ=255)                                                                               ttAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACGTTCGGCCGTGGAGAGTGATGGCt                                                          >  1:539953/1‑143 (MQ=255)                                                                                    gAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGAGCATATGGGAGTAATACCTGCATATGCGGTTGTCAGGTCAGGATGGTAGGGCACCTGCTTTGCACGCTCGGCCGTGGTCAGGGCTGGATGAggg                                                     >  2:577535/1‑143 (MQ=21)                                                                                     aGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCCGTGATGGCTGCGGGc                                                    >  1:730774/1‑143 (MQ=255)                                                                                        cagcgggggggtgCATTCTGCAGATTGTT‑CAAGCCTTAAGTTAGCGCTTAGGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGGAAGGGACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGaa                                                 <  1:74489/131‑1 (MQ=255)                                                                                         aCCGAGGCGTCGCATTCTTCAGATGGTTGCAAACC‑CAACCCAGCGCCTATGGGAGTAATCCCCGCATATCCGGTTGTCAGTTCAGGATGGTAACGCACCCGCTTTACACTTTCGCACGTGGTCAGTGATGGCTGCGGGCCaac                                                >  1:629332/1‑142 (MQ=255)                                                                                         aCCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGCGAGCGCTGCGGGCgcct                                                >  2:781822/1‑140 (MQ=255)                                                                                         aCCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGATCAAGATGGTAAGGCACCTCCCTTACACTTTCGCCCGTGGTCCGTGATGGATGGGGGCGAAt                                                >  1:99941/1‑143 (MQ=37)                                                                                             ctgcttCGCAGTCTTCAGATGGTT‑CAACCTTTATGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTa                                            <  1:829869/138‑1 (MQ=255)                                                                                             atgCGTCGCATTCTGCAGATGGTT‑CAACCCTTAGGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGGACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTa                                            <  1:323876/141‑1 (MQ=255)                                                                                                    gCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTAAGGATGGTAAGACACCTGCTTTACACTTTCGCCCGTGGTCAGTGAGGGCTGCGGGGGACTCGTAGCAGAtg                                     >  1:379502/1‑143 (MQ=38)                                                                                                          ttcAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCa                               >  2:347946/1‑143 (MQ=255)                                                                                                           tcAGATGGTT‑CAACCCTTAGGTTAGCGCTTATGCGAGTAATCCCCGCATCTCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACCCTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCaa                              <  2:819173/143‑1 (MQ=255)                                                                                                           tcAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGc                                                                                                                              <  2:668329/47‑1 (MQ=255)                                                                                                           tcAGATGGTT‑CAACCCTTAAGTTAGCGCGTATGGGAGTAATCCCCGc                                                                                                                              >  1:668329/1‑47 (MQ=255)                                                                                                               aTGGTT‑CAACCCTTAAGTTAGCGCTTCTGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTGTCGCCAGTGGTCAGTCCTGGCTGCGTGCGCATCGTACCAGCTGGTGGCAAtgag                          >  1:809538/1‑140 (MQ=255)                                                                                                                tGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAAt                         >  1:599127/1‑143 (MQ=255)                                                                                                                 ggTT‑CAGCCCTTTAGTTAGCGCTCATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGGTAGTATGGCTGCCGCTTCACCCGTTCGCCCGTTGTCATTGATGGCTGCGGGCGCATCGTACCAGATGTTGTCAATTAATc                        <  2:643709/143‑1 (MQ=255)                                                                                                                        ccccGTAAGTTAGCGCGTATGGGAGTAACCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACGCTTTCGCCCGTGGTCAGCGATCCGTGTGTGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTg                  <  1:62593/142‑1 (MQ=255)                                                                                                                        aCCCTGAAGTGAGCGCGGAGGGGAGTAATGCCCGCATATCCGGTGGTCAGGGCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTg                  <  2:470030/143‑1 (MQ=255)                                                                                                                            ttAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGTCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGcac              >  1:573295/1‑143 (MQ=255)                                                                                                                              ggggtAGCGGGTATGGGAGTAAGCCCCGCGTATGCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAg            <  1:749287/139‑1 (MQ=255)                                                                                                                               gttgaGCGCTTATGGGATTAATCCCCGCATCTCCGGTTGTCAGGTCAGGATGGCACGGCACCTGCTTTACTCTCTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATTGTACCAGATGTTTTCAATTAATCGTGTTGGCACAGc           <  1:551529/139‑1 (MQ=255)                                                                                                                                gTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCg          <  2:501708/143‑1 (MQ=255)                                                                                                                                 tgaGCGCTTCTGGGAGTAATCCCCGCATAGCCGGTTGTCAGGTCAGGATGGGAAGGCACCTGCTTTACACTTTCGCCCGTGGTGAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGt         <  2:877242/141‑1 (MQ=255)                                                                                                                                  tAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGtt        <  2:461315/143‑1 (MQ=255)                                                                                                                                   ggcgtgtATGGGAGTAAGCCCCGCATGTCCGGTTGGCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTa       <  1:794677/137‑1 (MQ=255)                                                                                                                                    gcgcTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTAt      >  1:606804/1‑143 (MQ=255)                                                                                                                                       cTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGAc   >  2:804480/1‑143 (MQ=255)                                                                                                                                       cTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGAc   >  2:824696/1‑143 (MQ=255)                                                                                                                                        ttATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACt  >  2:392782/1‑143 (MQ=255)                                                                                                                                           |                                                                                                                                            GGAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTT‑CAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACT  >  NC_000913/609210‑609486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.