New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2144164	44 (0.880)	4 (0.090)	3/264	7.4	8.8%	coding (899/3318 nt)	yegE	putative diguanylate cyclase
	?	NC_000913	= 2144173	42 (0.900)					coding (908/3318 nt)	yegE	putative diguanylate cyclase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATCCCTCCCTGCTTGCTACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAAGAGCTGCGCGGAC  >  NC_000913/2144022‑2144298                                                                                                                                               |                                                                                                                                       gATCCCTCCCTGCTTGCTACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAg                                                                                                                                        <  2:883331/143‑1 (MQ=255)      ctccctGCTTGCTACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGACTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGaaa                                                                                                                                   >  2:338228/1‑143 (MQ=255)          ctGCTTGCTACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAAAGCAAACACATATCCGAAAGCGAAACCCa                                                                                                                               >  1:7072/1‑143 (MQ=255)               tgctACGCGGGGTATGTACCTGAAGAGTCATGTGCCGTGGTTGCTGTTTTCGCCAAACCAACAAACCATTAATTTTATTACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACTTTTCCGAAAGCGAAACCCACTTTc                                                                                                                          <  1:185529/143‑1 (MQ=255)                  tACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAGGCGAGACCCGCTTTCGGa                                                                                                                       >  2:18095/1‑143 (MQ=255)                   aggccgcGTGCGGACCGGCTGAGCCATATGCCGGGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACAGCATGACCATGGGGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGaa                                                                                                                      <  1:154169/141‑1 (MQ=255)                         cgtacgtaCCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGAt                                                                                                                <  2:3185/143‑1 (MQ=255)                           tacgtacCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCCACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGCACCCGCTgg                                                                                                              >  1:864443/1‑143 (MQ=255)                            aggtacCTGACGAGCCCTATGCCGTGGCTCCCGTTTCTCCGTATTCTGCTGCCCGCCAACATCATGCCCATGGTGATGTATGCCTGTCGTGCGGAACGCACACACATTTCCGAAAGCGAAATCCACTTTCGGAACGCGATGGa                                                                                                             <  1:59311/141‑1 (MQ=255)                                 ccTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATAtt                                                                                                        <  2:593087/143‑1 (MQ=255)                                    gatgaGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCg                                                                                                     >  2:512817/1‑143 (MQ=255)                                             tatGCCGTCGATACCGTATTCACTTATCCTTTTGCCCGCCACCATCATCACAATATTGTTTTATGCCTCTCGCTTAGCACGCACACACATTTCCGAAAGCGAAATCCTGTTTCGGACCTCGATGTAATGTTCATCTAttgctt                                                                                            >  1:156430/1‑138 (MQ=255)                                                 ccGTGGCTACCGTTTTTGCTGATCCTGCTGCCTGCCAACATCATGACCATGGTGATGTATACCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACACACTTTCGGAACGCAGTGGCATATTCCGCTAACggactcgc                                                                                        >  1:358627/1‑137 (MQ=255)                                                   ggggCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTCTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGt                                                                                      <  2:440869/141‑1 (MQ=255)                                                        tACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACGCACTTTCGGAACGCGATGGAATATTCCGCTAGCGGTATGGCGGTAGTg                                                                                 >  2:130663/1‑143 (MQ=255)                                                                    tGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGa                                                                     <  2:366246/143‑1 (MQ=255)                                                                       tCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACaa                                                                  <  1:742755/143‑1 (MQ=255)                                                                       tCCTGCATCCCGCCAACACCCTGACCATGGGGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAATCCAAACCCACGTTCCGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACaa                                                                  <  2:104382/143‑1 (MQ=255)                                                                        ccTGCTGCCCGCCAACCTCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAAt                                                                 <  2:88898/143‑1 (MQ=255)                                                                         ctgctgCCCGCCAACATCATGACCATGGTGATGTATGGCTTTCGTGCGGAACGCAAACACATTGCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATg                                                                <  2:858611/143‑1 (MQ=255)                                                                              gcCCGCCAACTGCATGCCCCTCGGGACGCGTGCCTTTCGTACGGATCGCTAACTCATTTCCGAAAGCGAGACCCTCTTTCGGATCGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGc                                                           <  1:97792/143‑1 (MQ=255)                                                                              gcCCGCCAACGTCAGGACCGTGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGc                                                           <  2:300149/143‑1 (MQ=255)                                                                              gcCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCAATCGGTATGGCGTCAGTGGGCCCCGAGGGACAATGGCTGc                                                           >  1:619465/1‑143 (MQ=255)                                                                                     aaCATCATGACCATGGTGATGTATGCCTGTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACcaa                                                    <  2:174902/143‑1 (MQ=255)                                                                                          cacgACCATGGTGATGTACGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGGTGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAg                                               <  1:493865/140‑1 (MQ=255)                                                                                           atGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACAAACAAAgc                                              >  1:412109/1‑143 (MQ=255)                                                                                            tGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACCATGGCTGCAAACCAACAAAgcg                                             >  2:68484/1‑143 (MQ=255)                                                                                             gACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAgcgc                                            >  2:669132/1‑143 (MQ=255)                                                                                                cATGGGTATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGctct                                         <  1:694228/143‑1 (MQ=255)                                                                                                          tATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGGGGGCCCCTGCCTTCTGCCCAACTAAGCGCTCTTCCAATTtct                               >  2:236599/1‑143 (MQ=255)                                                                                                             gCCTTTCGGGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCgg                            <  2:619465/143‑1 (MQ=255)                                                                                                                tttCGTGCGGAACGCAAACACATTTCCGAAGGCGAAACCCACTTTCGGAACGCTCTGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGGGCTCTGCCAGTTTCTCgggca                         >  1:342933/1‑141 (MQ=255)                                                                                                                tttCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTa                         >  2:346158/1‑143 (MQ=255)                                                                                                                gcgcGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTa                         <  2:118925/140‑1 (MQ=255)                                                                                                                         gAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGa                >  2:760810/1‑143 (MQ=255)                                                                                                                          aaCGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGCTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTATGCCAGTGTCTCGGGGACAGTCAGGaa               >  1:521057/1‑143 (MQ=255)                                                                                                                              cgagcacaTGTCCGACAGCGGAACCCACGTTGGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAAGAGc           <  1:883269/139‑1 (MQ=255)                                                                                                                               aaaCACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCCGTTTCTCGGGTACAGTCAGGACGAGCt          >  2:769504/1‑143 (MQ=255)                                                                                                                               aaaCACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGGTTCTCGGGTGCAGGCAGGAAGGGCt          >  1:512311/1‑143 (MQ=255)                                                                                                                                   cactctgcataaGCGCAGCCGACGTTCGCAACGCTGCGGAATACACCGCTATCGGTATGGCTGTAGCGGTCGCCGACGGACATTGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAAGAGCTgcgc      <  1:826469/133‑1 (MQ=255)                                                                                                                                   acaTTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAAGAGCTgcgc      <  2:671859/143‑1 (MQ=255)                                                                                                                                   acaTTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTCCCAGTGTCGCGGGTACAGTCAGGAGGACCTgcgc      >  1:265283/1‑143 (MQ=255)                                                                                                                                     aTTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAGGGGCTGCGCgg    >  2:291470/1‑143 (MQ=255)                                                                                                                                      tttCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGAATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAACCCAACAAAGCGCCCTGCCAGTTTCTCGGGTACAGTCAGGCAGAGCAGCCCGGa   >  1:621009/1‑143 (MQ=255)                                                                                                                                       ttgccaaaGCGAACCCCACTTTCGGAACGCGATGGAATCTTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGAAAGAGCTGCGCGGAc  <  2:7072/138‑1 (MQ=255)                                                                                                                                               |                                                                                                                                       GATCCCTCCCTGCTTGCTACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAAGAGCTGCGCGGAC  >  NC_000913/2144022‑2144298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.