New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2144164	44 (0.880)	4 (0.090)	3/264	7.4	8.8%	coding (899/3318 nt)	yegE	putative diguanylate cyclase
	?	NC_000913	= 2144173	42 (0.900)					coding (908/3318 nt)	yegE	putative diguanylate cyclase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGCTTGCTACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAAGAGCTGCGCGGACTCACCTTTCAGCAAC  >  NC_000913/2144031‑2144313                                                                                                                                               |                                                                                                                                             ctGCTTGCTACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAAAGCAAACACATATCCGAAAGCGAAACCCa                                                                                                                                              >  1:7072/1‑143 (MQ=255)      tgctACGCGGGGTATGTACCTGAAGAGTCATGTGCCGTGGTTGCTGTTTTCGCCAAACCAACAAACCATTAATTTTATTACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACTTTTCCGAAAGCGAAACCCACTTTc                                                                                                                                         <  1:185529/143‑1 (MQ=255)         tACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAGGCGAGACCCGCTTTCGGa                                                                                                                                      >  2:18095/1‑143 (MQ=255)          aggccgcGTGCGGACCGGCTGAGCCATATGCCGGGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACAGCATGACCATGGGGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGaa                                                                                                                                     <  1:154169/141‑1 (MQ=255)                cgtacgtaCCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGAt                                                                                                                               <  2:3185/143‑1 (MQ=255)                  tacgtacCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCCACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGCACCCGCTgg                                                                                                                             >  1:864443/1‑143 (MQ=255)                   aggtacCTGACGAGCCCTATGCCGTGGCTCCCGTTTCTCCGTATTCTGCTGCCCGCCAACATCATGCCCATGGTGATGTATGCCTGTCGTGCGGAACGCACACACATTTCCGAAAGCGAAATCCACTTTCGGAACGCGATGGa                                                                                                                            <  1:59311/141‑1 (MQ=255)                        ccTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATAtt                                                                                                                       <  2:593087/143‑1 (MQ=255)                           gatgaGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCg                                                                                                                    >  2:512817/1‑143 (MQ=255)                                    tatGCCGTCGATACCGTATTCACTTATCCTTTTGCCCGCCACCATCATCACAATATTGTTTTATGCCTCTCGCTTAGCACGCACACACATTTCCGAAAGCGAAATCCTGTTTCGGACCTCGATGTAATGTTCATCTAttgctt                                                                                                           >  1:156430/1‑138 (MQ=255)                                        ccGTGGCTACCGTTTTTGCTGATCCTGCTGCCTGCCAACATCATGACCATGGTGATGTATACCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACACACTTTCGGAACGCAGTGGCATATTCCGCTAACggactcgc                                                                                                       >  1:358627/1‑137 (MQ=255)                                          ggggCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTCTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGt                                                                                                     <  2:440869/141‑1 (MQ=255)                                               tACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACGCACTTTCGGAACGCGATGGAATATTCCGCTAGCGGTATGGCGGTAGTg                                                                                                >  2:130663/1‑143 (MQ=255)                                                           tGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGa                                                                                    <  2:366246/143‑1 (MQ=255)                                                              tCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACaa                                                                                 <  1:742755/143‑1 (MQ=255)                                                              tCCTGCATCCCGCCAACACCCTGACCATGGGGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAATCCAAACCCACGTTCCGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACaa                                                                                 <  2:104382/143‑1 (MQ=255)                                                               ccTGCTGCCCGCCAACCTCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAAt                                                                                <  2:88898/143‑1 (MQ=255)                                                                ctgctgCCCGCCAACATCATGACCATGGTGATGTATGGCTTTCGTGCGGAACGCAAACACATTGCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATg                                                                               <  2:858611/143‑1 (MQ=255)                                                                     gcCCGCCAACTGCATGCCCCTCGGGACGCGTGCCTTTCGTACGGATCGCTAACTCATTTCCGAAAGCGAGACCCTCTTTCGGATCGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGc                                                                          <  1:97792/143‑1 (MQ=255)                                                                     gcCCGCCAACGTCAGGACCGTGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGc                                                                          <  2:300149/143‑1 (MQ=255)                                                                     gcCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCAATCGGTATGGCGTCAGTGGGCCCCGAGGGACAATGGCTGc                                                                          >  1:619465/1‑143 (MQ=255)                                                                            aaCATCATGACCATGGTGATGTATGCCTGTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACcaa                                                                   <  2:174902/143‑1 (MQ=255)                                                                                 cacgACCATGGTGATGTACGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGGTGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAg                                                              <  1:493865/140‑1 (MQ=255)                                                                                  atGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACAAACAAAgc                                                             >  1:412109/1‑143 (MQ=255)                                                                                   tGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACCATGGCTGCAAACCAACAAAgcg                                                            >  2:68484/1‑143 (MQ=255)                                                                                    gACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAgcgc                                                           >  2:669132/1‑143 (MQ=255)                                                                                       cATGGGTATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGctct                                                        <  1:694228/143‑1 (MQ=255)                                                                                                 tATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGGGGGCCCCTGCCTTCTGCCCAACTAAGCGCTCTTCCAATTtct                                              >  2:236599/1‑143 (MQ=255)                                                                                                    gCCTTTCGGGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCgg                                           <  2:619465/143‑1 (MQ=255)                                                                                                       tttCGTGCGGAACGCAAACACATTTCCGAAGGCGAAACCCACTTTCGGAACGCTCTGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGGGCTCTGCCAGTTTCTCgggca                                        >  1:342933/1‑141 (MQ=255)                                                                                                       tttCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTa                                        >  2:346158/1‑143 (MQ=255)                                                                                                       gcgcGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTa                                        <  2:118925/140‑1 (MQ=255)                                                                                                                gAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGa                               >  2:760810/1‑143 (MQ=255)                                                                                                                 aaCGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGCTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTATGCCAGTGTCTCGGGGACAGTCAGGaa                              >  1:521057/1‑143 (MQ=255)                                                                                                                     cgagcacaTGTCCGACAGCGGAACCCACGTTGGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAAGAGc                          <  1:883269/139‑1 (MQ=255)                                                                                                                      aaaCACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCCGTTTCTCGGGTACAGTCAGGACGAGCt                         >  2:769504/1‑143 (MQ=255)                                                                                                                      aaaCACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGGTTCTCGGGTGCAGGCAGGAAGGGCt                         >  1:512311/1‑143 (MQ=255)                                                                                                                          cactctgcataaGCGCAGCCGACGTTCGCAACGCTGCGGAATACACCGCTATCGGTATGGCTGTAGCGGTCGCCGACGGACATTGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAAGAGCTgcgc                     <  1:826469/133‑1 (MQ=255)                                                                                                                          acaTTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAAGAGCTgcgc                     <  2:671859/143‑1 (MQ=255)                                                                                                                          acaTTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTCCCAGTGTCGCGGGTACAGTCAGGAGGACCTgcgc                     >  1:265283/1‑143 (MQ=255)                                                                                                                            aTTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAGGGGCTGCGCgg                   >  2:291470/1‑143 (MQ=255)                                                                                                                             tttCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGAATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAACCCAACAAAGCGCCCTGCCAGTTTCTCGGGTACAGTCAGGCAGAGCAGCCCGGa                  >  1:621009/1‑143 (MQ=255)                                                                                                                              ttgccaaaGCGAACCCCACTTTCGGAACGCGATGGAATCTTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGAAAGAGCTGCGCGGAc                 <  2:7072/138‑1 (MQ=255)                                                                                                                                            cccACTGTCGCAGCGCGCTGGAATATCCCGCTATCGGTATGGCGGTAGTGGGCACCGAGGGACAATGGCGGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTAAGGAAGAGCTGGGCGGACTCACCTTTCAGCaa   <  1:458831/143‑1 (MQ=255)                                                                                                                                            cccACTCTCCGAACGCGATAGAAGATTCCGGTGTCGGTATGTCGTTAGTGTGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAAGAGCTGCGCGGACTCACCTTTCAGCaa   <  2:119558/143‑1 (MQ=255)                                                                                                                                             ccACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGGACAGTCAGAAAGAGCTGCGCGGACTGACCTTTCAGCAAc  >  1:606784/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                             CTGCTTGCTACGCCGCGTACGTACCTGATGAGCCATATGCCGTGGCTACCGTTTTTGCTGATCCTGCTGCCCGCCAACATCATGACCATGGTGATGTATGCCTTTCGTGCGGAACGCAAACACATTTCCGAAAGCGAAACCCACTTTCGGAACGCGATGGAATATTCCGCTATCGGTATGGCGTTAGTGGGCACCGAGGGACAATGGCTGCAAACCAACAAAGCGCTCTGCCAGTTTCTCGGGTACAGTCAGGAAGAGCTGCGCGGACTCACCTTTCAGCAAC  >  NC_000913/2144031‑2144313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.