| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,311 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909311 | 3910084 | 774 | 48 [0] | [0] 47 | [pstA]–[pstC] | [pstA], [pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909310 | 0 (0.000) | 43 (0.900) | 37/268 | 0.2 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910085 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
AAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCC > NC_000913/3909168‑3909450 | acattAACACCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAG < 1:248133‑M1/141‑1 (MQ=255) ccctcccGCTTCCTTCCAGAGCGTCCGCCCGACCACCTCCTCCCGTAATAGGCGGCTGCGTCATTTCACTGCACAGTGCCAGCGACATACCGTCGATACCCCGAGTGATGGTGCACATTAAAATCCAGTTCAGCCAggcgcaa < 1:75107/139‑7 (MQ=255) cAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCGTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAAGCGAGCTCAGCCAGgcgcaag > 1:872884‑M1/1‑136 (MQ=255) gCCCTCTGCGCGCCAGGGCGTTCGCCAGACCACCACCTTCCGTATTGAGCGGCGGCTTCATTTCAGTGAGGAGCGCCAGCGACGTGTCGTCGACACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagct < 1:810586‑M1/143‑10 (MQ=255) cccGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCACgcgcaagctc > 2:693273‑M1/1‑133 (MQ=255) ccGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTCTTGGGCGGCGGCGTCACTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGAAGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctca > 1:195743‑M1/1‑132 (MQ=255) ccGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCCGgcgcaagctcg > 1:194787‑M1/1‑132 (MQ=255) ccGCCATAGCGTTCGCCGGACCACCCCCTTCCGTATTGGGCGGCGGCGTCAGTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcagga < 2:254219‑M1/143‑19 (MQ=255) gCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTCACATCCAGATCAGCCGGgcgcaggcccggtcagtaac > 2:780978‑M1/1‑123 (MQ=255) agagCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctccgtcaggagcagg > 2:577802‑M1/1‑120 (MQ=255) agagCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATACAGATCAGCCAGgcgcaagctcaggcaggaacaag > 1:337308‑M1/1‑120 (MQ=255) gCCAGACCACCACCTGCGGTAGTGGGCGGCGGCGTCATTGCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccg < 2:312515‑M1/143‑33 (MQ=255) accaccaccTTCCGTATTGGGCGGCGGCGTCCTTACAGTGAACAGCGCCCGCGACATACCGTCGATACCGCGAGTGAGGGTGGACAGTAACATCCAGATCAGCCCGccgcaagctcagtcaggcaaacggcaacaccgaacga > 1:42827‑M1/1‑106 (MQ=255) accaccaccTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaact < 1:337156‑M1/143‑38 (MQ=255) caccaccTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactca < 2:577333‑M1/143‑40 (MQ=255) caccaccTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactca > 2:32088‑M1/1‑104 (MQ=255) accaccTTCCGTATCGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcac < 1:359371‑M1/143‑41 (MQ=255) accaccGTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcac < 1:656171‑M1/143‑41 (MQ=255) cttgGGCGGCGGCGTCATTTGAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgat < 1:150179‑M1/142‑53 (MQ=255) ggcggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTACAATCCAGATCACCCAGgcgcaagctcagccagcaccagcgccataccgaacctccccgggcccgcgatcacccgc > 1:204804‑M1/1‑84 (MQ=255) cggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaacacaccgggacggcgatcagcagcgc > 1:514018‑M1/1‑82 (MQ=255) cggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGAGCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgc < 2:416319‑M1/143‑62 (MQ=255) ggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGGGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcg < 2:860405‑M1/143‑63 (MQ=255) gcgTCACTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcga < 1:218328‑M1/143‑64 (MQ=255) tCATTTCAGTGAACAGCGCCAGCCACACACCTTTGCTACCGCGAGTGATGGTGGACATTAAAGTCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataa < 2:594210‑M1/143‑67 (MQ=255) gacttcagTGCACAGCGCCAGCGACATACCGTCGATACCGCGAGTCATGGTGGACATGAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaa < 1:688166‑M1/140‑68 (MQ=255) tCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaa < 2:2266‑M1/143‑72 (MQ=255) tGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtca > 2:286708‑M1/1‑68 (MQ=255) tGAACAGCGCCAGCGACAGCCCGTCGATACCGCTAGTGATGGTGTACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtca < 1:47542‑M1/143‑76 (MQ=255) aGCGCCAGCGACATCCCGGCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaac < 2:186780‑M1/143‑81 (MQ=255) gcgcCAGCGACATCCCGGCGATACCGGGAGTGATGGTGGACATTAAAATCCAGATCAGCCGGgcgcgaggtcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacg < 2:405481‑M1/143‑82 (MQ=255) ccatccacttaccttcgatACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtac < 1:566677‑M1/134‑85 (MQ=255) gCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgt > 2:472198‑M1/1‑56 (MQ=255) gACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtag < 2:414313‑M1/143‑90 (MQ=255) aCATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtaga > 2:394493‑M1/1‑53 (MQ=255) tACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctaagtcaggaacagggcgataccgacactcaccgggacggcgatcagcagcgcgataaacgaagtccccaacgtaccgcaaatcc > 2:395304‑M1/1‑50 (MQ=255) gTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagataggcac > 1:727138‑M1/1‑46 (MQ=255) gcgAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgatacacgaagtcacccacgtaccgtagttcgtcacccgcgcccc > 2:344007‑M1/1‑37 (MQ=255) gTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagatcggaagag < 1:833301‑M1/143‑111 (MQ=255) gACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactccccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtggatcggcacgagcgccccgtaggtgtcggtc > 2:178679‑M1/1‑24 (MQ=255) gACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaaggcaccaacgtaccgtagatcggcaccagcgccccggagatatcgttc > 2:178678‑M1/1‑24 (MQ=255) aTTAAAGTCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatccgcaacgcgataaacgaaataacacacgtaccgcagatcagcaccagcgcccagtaggactcgtagcga > 1:292383‑M1/1‑21 (MQ=255) aTTAAAATCCAGATCCGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggt < 1:245648‑M1/143‑123 (MQ=255) aTTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggt > 1:450416‑M1/1‑21 (MQ=255) tcaaaatcCAGATCACCCAGgcgcaagctcagtcaggaacagggcgataccgacactccccgtgacggcgatcagcagcgcgatcaacgtagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtg < 2:109‑M1/141‑124 (MQ=255) ccAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttggt < 2:727138‑M1/143‑140 (MQ=255) ccAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaacagcgccccgtagatatcgttcggtgcatcccactctttagc > 1:475177‑M1/1‑4 (MQ=255) cAGgcacaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttggtc < 2:425111‑M1/143‑141 (MQ=255) | AAATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCC > NC_000913/3909168‑3909450 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |