| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,311 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909311 | 3910084 | 774 | 48 [0] | [0] 47 | [pstA]–[pstC] | [pstA], [pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909310 | 0 (0.000) | 43 (0.900) | 37/268 | 0.2 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910085 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
ATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTCCAT > NC_000913/3909949‑3910227 | cagcccgctacccgccagagcgttcgccagaccaccaccgtccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaagcgagctcagccagGCGCAAg > 1:872884‑M2/137‑143 (MQ=255) gccctctgcgcgccagggcgttcgccagaccaccaccttccgtattgagcggcggcttcatttcagtgaggagcgccagcgacgtgtcgtcgacaccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCt < 1:810586‑M2/9‑1 (MQ=255) cccgctacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccacGCGCAAGCtc > 2:693273‑M2/134‑143 (MQ=255) ccgctacccgccagagcgttcgccagaccaccaccttccgtcttgggcggcggcgtcacttcagtgaacagcgccagcgacataccgtcgataccgcgagtgaaggtggacattaaaatccagatcagccagGCGCAAGCtca > 1:195743‑M2/133‑143 (MQ=255) ccgctacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagcccgGCGCAAGctcg > 1:194787‑M2/133‑142 (MQ=255) ccgccatagcgttcgccggaccacccccttccgtattgggcggcggcgtcagttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGa < 2:254219‑M2/18‑1 (MQ=255) gccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattcacatccagatcagccggGCGCAGGCCCGGTCAGTAAc > 2:780978‑M2/124‑143 (MQ=255) agagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCCGTCAGGAGCAgg > 2:577802‑M2/121‑143 (MQ=255) agagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatacagatcagccagGCGCAAGCTCAGGCAGGAacaag > 1:337308‑M2/121‑141 (MQ=255) gccagaccaccacctgcggtagtgggcggcggcgtcattgcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCg < 2:312515‑M2/32‑1 (MQ=255) accaccaccttccgtattgggcggcggcgtccttacagtgaacagcgcccgcgacataccgtcgataccgcgagtgagggtggacagtaacatccagatcagcccgCCGCAAGCTCAGTCAGGCAAACGGCAACAccgaacga > 1:42827‑M2/107‑140 (MQ=255) accaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACt < 1:337156‑M2/37‑1 (MQ=255) caccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCa < 2:577333‑M2/39‑1 (MQ=255) caccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCa > 2:32088‑M2/105‑143 (MQ=255) accaccttccgtatcgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCAc < 1:359371‑M2/40‑1 (MQ=255) accaccgtccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCAc < 1:656171‑M2/40‑1 (MQ=255) cttgggcggcggcgtcatttgagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGAt < 1:150179‑M2/52‑1 (MQ=255) ggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattacaatccagatcacccagGCGCAAGCTCAGCCAGCACCAGCGCCATACCGAACCTCCCCGGGCCCgcgatcacccgc > 1:204804‑M2/85‑138 (MQ=255) cggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACACACCGGGACGGCGATCAGCAgcgc > 1:514018‑M2/83‑143 (MQ=255) cggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagagcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAgcgc < 2:416319‑M2/61‑1 (MQ=255) ggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatgggggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGcgcg < 2:860405‑M2/62‑1 (MQ=255) gcgtcacttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGa < 1:218328‑M2/63‑1 (MQ=255) tcatttcagtgaacagcgccagccacacacctttgctaccgcgagtgatggtggacattaaagtccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATaa < 2:594210‑M2/66‑1 (MQ=255) gacttcagtgcacagcgccagcgacataccgtcgataccgcgagtcatggtggacatgaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATaaa < 1:688166‑M2/67‑1 (MQ=255) tcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGaa < 2:2266‑M2/71‑1 (MQ=255) tgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCa > 2:286708‑M2/69‑143 (MQ=255) tgaacagcgccagcgacagcccgtcgataccgctagtgatggtgtacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCa < 1:47542‑M2/75‑1 (MQ=255) agcgccagcgacatcccggcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAAc < 2:186780‑M2/80‑1 (MQ=255) gcgccagcgacatcccggcgataccgggagtgatggtggacattaaaatccagatcagccggGCGCGAGGTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACg < 2:405481‑M2/81‑1 (MQ=255) ccatccacttaccttcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTAc < 1:566677‑M2/84‑1 (MQ=255) gcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGt > 2:472198‑M2/57‑143 (MQ=255) gacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAg < 2:414313‑M2/89‑1 (MQ=255) acataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGa > 2:394493‑M2/54‑143 (MQ=255) taccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTAAGTCAGGAACAGGGCGATACCGACACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCCCCAACGTACCGCAAAtcc > 2:395304‑M2/51‑142 (MQ=255) gtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATAGGCAc > 1:727138‑M2/47‑143 (MQ=255) gcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATACACGAAGTCACCCACGTACCGTAGTTCGTCACCCGCGcccc > 2:344007‑M2/38‑143 (MQ=255) gtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGatcggcaccagatcggaagag < 1:833301‑M2/110‑11 (MQ=255) gacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCCCCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTGGATCGGCACGAGCGCCCCGTAGGTGTCGGTc > 2:178679‑M2/25‑143 (MQ=255) gacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGGCACCAACGTACCGTAGATCGGCACCAGCGCCCCGGAGATATCGTTc > 2:178678‑M2/25‑143 (MQ=255) attaaagtccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCCGCAACGCGATAAACGAAATAACACACGTACCGCAGATCAGCACcagcgcccagtaggactcgtagcga > 1:292383‑M2/22‑131 (MQ=255) attaaaatccagatccgccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGt < 1:245648‑M2/122‑1 (MQ=255) attaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGt > 1:450416‑M2/22‑143 (MQ=255) tcaaaatccagatcacccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGACACTCCCCGTGACGGCGATCAGCAGCGCGATCAACGTAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTg < 2:109‑M2/123‑1 (MQ=255) ccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGt < 2:727138‑M2/139‑1 (MQ=255) ccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCAACAGCGCCCCGTAGATATCGTTCGGTGCATCCCActctttagc > 1:475177‑M2/5‑140 (MQ=255) cagGCACAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTc < 2:425111‑M2/140‑1 (MQ=255) gcgcAAGCTCAGTCAGGACCAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCGCCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTCCAt > 2:32404/1‑143 (MQ=255) | ATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTCCAT > NC_000913/3909949‑3910227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |