New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	153986 =	2 (0.040)	92 (1.840)	51/282	0.0	97.9%	coding (1441/2598 nt)	htrE	putative outer membrane usher protein
	?	NC_000913	= 275149	NA (NA)					intergenic (‑32/‑176)	insH1/mmuP	IS5 transposase and trans‑activator/CP4‑6 prophage, putative S‑methylmethionine transporter

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACCTTCTT  >  NC_000913/275011‑275289                                                                                                                                           |                                                                                                                                             aaaaTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAg                                                                                                                                          <  2:208507/143‑1 (MQ=32)  aaaTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg                                                                                                                                         <  2:301632/143‑1 (MQ=33)   actctcTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCATGGACTTGTTCGCACCTTCCGGAGGc                                                                                                                                        <  1:242815/141‑1 (MQ=21)       tctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGCTa                                                                                                                                    >  2:131011/1‑143 (MQ=25)        ctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTAt                                                                                                                                   >  2:142718/1‑143 (MQ=38)               ggggtggcGGGGCTGACTGCTGAATTCACTGGCGGCGAAGGTAAGTTGATGACTCATGATGACCCCTGTTCTATGGCTCCAGATGCCAATCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTgg                                                                                                                            <  2:492217/136‑1 (MQ=14)                gTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggc                                                                                                                           >  1:423694/1‑143 (MQ=255)                 tCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggcg                                                                                                                          <  2:672545/143‑1 (MQ=255)                 tCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGGTATGAGCTggcg                                                                                                                          >  2:523009/1‑143 (MQ=255)                     aCGGCGCTTACTGCTGAATTAACTGTCAGCGAAGGTAAGTGGATGACTCATGATGAACCCTGCTCTATGGCTCCAGATGACAAACATGATCTCATATCACGGACTTGTTCGCACCTTCAGGAGGCGTTATGAGCTggaagacc                                                                                                                      >  1:119537/1‑137 (MQ=14)                         cgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCtttt                                                                                                                  <  2:204621/143‑1 (MQ=255)                              aCTGCTCAATTCACGGTCGGCGAAGGTAAGTGGATGACTCATGATGATCCCTGTTCTATGGCTCCAGATGACAAGCATGATCTCATATCAGGGACTTGCTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTAt                                                                                                             <  1:704873/143‑1 (MQ=18)                                  ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGa                                                                                                         >  2:348106/1‑143 (MQ=255)                                  ctgAATTCACTGTCGGCGAAGGTAAGTTGATGAACAGAGACCAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTGAGGCGCGGCCGGCCCTTTTTGTATCTgt                                                                                                         >  1:105901/1‑142 (MQ=14)                                    gAAGTCAGTGTCGGCGAAGGTAAGCTGATGACTGAGGGTGAACCCTGGTCTAGGGGTCCAGATGACAAGCATGGTCTCATAGCAGGGACTGGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatt                                                                                                       <  2:311203/143‑1 (MQ=255)                                        tCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGAttatta                                                                                                   >  2:102594/1‑143 (MQ=255)                                          aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt                                                                                                 <  1:763233/143‑1 (MQ=255)                                             gTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccc                                                                                              <  2:31769/143‑1 (MQ=255)                                                ggCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCACCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCAGAGGCGCAATGAGCTGGCGGCGCTGTTTGTATCTGATGATTAATGCCCAc                                                                                           >  1:868361/1‑143 (MQ=17)                                                  cGAAGGGAGGTGGGTGCCTCATGAAGAACCCCGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCAccc                                                                                         <  2:434296/143‑1 (MQ=21)                                                  cGAAGGAAAGGTGAGGACCCAAGAGGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCAccc                                                                                         <  2:437291/143‑1 (MQ=21)                                                        tAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTAtt                                                                                   <  2:510531/143‑1 (MQ=255)                                                         aaGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTa                                                                                  <  2:295442/143‑1 (MQ=255)                                                          ctttGATGCGTCATGATTATCCCTGTTCTCTGCCTCGAATTGACAAACATGATCTCATATCCGGGAGTTGTTCGCTCCTTCCGGATGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTaa                                                                                 <  1:6777/141‑1 (MQ=25)                                                           gTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt                                                                                                 >  2:4557/1‑126 (MQ=255)                                                           gTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt                                                                                                 <  1:4557/126‑1 (MQ=255)                                                               atgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGAGATCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTTGGGGTCCTGTTTGTATCTGATTATTAATCACACCCCGCTATTCAGCGcc                                                                            >  1:810354/1‑143 (MQ=18)                                                                tgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGccc                                                                           >  2:730865/1‑143 (MQ=255)                                                                   cTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTCGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGgc                                                                        >  1:723832/1‑143 (MQ=255)                                                                    tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGCGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTCATCCACACCACCAATCACGCGCCCAgcc                                                                       >  1:749113/1‑142 (MQ=18)                                                                    tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGgcg                                                                       >  2:125319/1‑143 (MQ=255)                                                                         atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGGTATGAGCTGGCGGCCCTTTTTGTATCTGATTCGTAATCCCCACCCGCTATTCAGCGCCCGGCGCGGGc                                                                  >  2:218270/1‑143 (MQ=255)                                                                               ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCCGGGACTTGTTCGCACCTTCCGGAGGCGTTCTGAGCTGGCGGCCCTTTTTGTATCTCATTATCCATCCCCACCCGCACTTAAGCCACCCGCGCGGCCATCCGc                                                            >  1:373716/1‑143 (MQ=21)                                                                                     cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGggcgtcggcgtcatt                                                      >  2:73712/1‑140 (MQ=255)                                                                                                     cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGGTTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGAGTTGACTTTg                                      >  2:483812/1‑143 (MQ=255)                                                                                                      aaaGATGATCTGATATCAGGGACTTGTTCGCACCGTCTGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAGCCCCACCCGCGATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGc                                     <  1:395842/143‑1 (MQ=255)                                                                                                           tGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCt                                <  2:555344/143‑1 (MQ=255)                                                                                                              tctgATATCAGGGACTTGGTCGTTCCTTGCGGAGGCGTTGTGAGCTTGCGGTCCTGTTTGTATCTGATTATTAATCCCCCACCGTTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGtt                             <  1:292793/143‑1 (MQ=255)                                                                                                                tcATGTCAGGGACTTGGTCGCACCTTCCGGAGGCGTTATGCGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTaa                           <  1:782484/143‑1 (MQ=255)                                                                                                                tcAGATCAGGGTCTTGTGCGCACCTCCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTaa                           <  2:825591/143‑1 (MQ=255)                                                                                                                        gggACTTGTTCGCACCTTCCGGAGTCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAAcgcg                   <  1:674500/143‑1 (MQ=255)                                                                                                                        gggACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAAcgcg                   >  2:684744/1‑143 (MQ=255)                                                                                                                          gACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGACCGGCGCGGGCATCTGCGTCTGGTGCATTGTTGAGTTTGCATTCTGTTAAAAAAcaaggt                 >  2:119010/1‑138 (MQ=255)                                                                                                                                 tCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACACACCCGGTATAACaa          >  2:335013/1‑143 (MQ=255)                                                                                                                                  cGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACaaa         <  1:125319/143‑1 (MQ=255)                                                                                                                                         tCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACcttctt  <  2:569961/143‑1 (MQ=255)                                                                                                                                           |                                                                                                                                             AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACCTTCTT  >  NC_000913/275011‑275289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.