New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1491910	1 (0.020)	58 (1.190)	55/274	0.0	98.4%	intergenic (+60/+12)	ydcA/hokB	putative periplasmic protein/toxic polypeptide, small
	?	NC_000913	2514275 =	NA (NA)					intergenic (+33/‑54)	nupC/insL1	nucleoside (except guanosine) transporter/IS186 transposase

GCCTGAATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCG  >  NC_000913/2514133‑2514400                                                                                                                                               |                                                                                                                              gCCTGAATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGCGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCa                                                                                                                               >  2:250975/1‑143 (MQ=255)   cTGAATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTCAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATa                                                                                                                             >  1:769528/1‑143 (MQ=255)        tgaaGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCCATCGCAGCACTGGTGCTGTAAGACCATACATGAAAAAGCGGGGGATAATTCCCATGGgcgc                                                                                                                        >  2:323052/1‑143 (MQ=255)         gaaGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTTCCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCt                                                                                                                       <  2:27892/143‑1 (MQ=255)           cgagCAAGGTAACGTGGTTTCTCGCTTCGGTCGGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTaa                                                                                                                     <  1:455106/142‑1 (MQ=255)             agCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTCGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTACCATAAGCGCTAACt                                                                                                                   >  2:176566/1‑143 (MQ=255)                aaGTTAATGTGGTTTCTTGCTTCGGTATGATGCTGGTTTACGGCTTTAACCTTGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGTTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTaa                                                                                                                <  1:747561/143‑1 (MQ=255)                   gTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGCGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCAGACATAAAGAAGCCGGGGATAGTTCCCGTGAGCGCTGACTTAAgga                                                                                                             >  2:67684/1‑142 (MQ=255)                     aaCGTGGTTTCTCGTTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGtt                                                                                                           <  1:794909/143‑1 (MQ=255)                     aaCGTGGTTTCTCGCTTCGGTCGGACGCTGGTTTACGGCTCTGCCCCTGTGAGGGTGCTGTCTGCGTCAATCGCAGCACGGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGtt                                                                                                           <  2:426984/143‑1 (MQ=255)                     aaCGTGGTTTCTCGCTTCGGTATGAAGCTGGTTTCCGGCTCTACCCTGGCCAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGCAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGtt                                                                                                           <  1:337072/143‑1 (MQ=255)                       cggggTTTCTCGCTTCGGTCTGACGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtgt                                                                                                         <  1:173484/140‑1 (MQ=255)                        gtggtgTCTCGCGTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTtgtg                                                                                                        <  2:166468/143‑1 (MQ=255)                            tttCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAACAAGCCGGGACTAATCCCCATAAGCGCTAACTTAAGGGTTGGGGTac                                                                                                    >  1:181818/1‑142 (MQ=255)                              tctcGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCCGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGTTAACTTAAGGGTTGTGGTATTa                                                                                                  <  2:64210/143‑1 (MQ=255)                              tctcGCTCCGTTCTGACGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTa                                                                                                  <  1:703517/143‑1 (MQ=255)                                tcGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACg                                                                                                >  1:283910/1‑143 (MQ=255)                                tcGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCCGGTGAGTGTTCGCTCTGCGTCAATCGGAGCAATGGTGATGTAAGACCATACATTAAAATGCCGGGGATAATTCCCATAAGCGCTATCTTAAGGTGTGTgggttttct                                                                                                >  2:36228/1‑136 (MQ=255)                                  gCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCACTCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCTCATAAACGCTAACTTAAGGGGTGTAGTAttcacca                                                                                              >  1:265814/1‑138 (MQ=255)                                  gCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAGAGCCGGGGATAATTCCCATAAGAGCTTACTTAAGGGTTGTGGtccgtcggc                                                                                              >  2:73768/1‑135 (MQ=255)                                  gCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGcc                                                                                              >  2:433230/1‑143 (MQ=255)                                         tCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATACAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGGTGAGCGATTACGCCTGctagg                                                                                       >  1:723347/1‑141 (MQ=255)                                             aaGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATCAGCGCTAACTTAAGGGTTGTGGTACTACGCCTGATACGAttt                                                                                   >  1:671888/1‑143 (MQ=255)                                                  ggTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTCACGt                                                                              >  2:133390/1‑143 (MQ=255)                                                    tttGCGGCTCGAGCCTGGTTAGGGTGCTGTCTACGCCGATCGCATCACTGGTGCTGTAAGCCCATACATAAAAAAGCCTGGGATAATTCCCATAAACGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGc                                                                            <  1:790737/143‑1 (MQ=21)                                                           gggtacggtGGGGAGTGTGGTGTGTGCGTCAAGCGCAGCACTGGTGCTGTAAGGCCATACATAAAAAAGCGGGGGATAATTCCCATAAGCGCTAACGTAAGGGTTGTGGTATTACTCCTGATATGATTTAACGTGCCGATGaa                                                                     <  1:270111/135‑1 (MQ=21)                                                           ctgtgcccGGGTGAGTGTGCCGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa                                                                     <  1:130797/138‑1 (MQ=255)                                                           ctctACCCGGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGaa                                                                     <  1:837465/143‑1 (MQ=255)                                                            tctACGCTGGTGGGTGTGCTGTCTGCGTGAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt                                                                    <  1:398001/143‑1 (MQ=255)                                                                ctctgtttaGTGTGCTGTCTTCGTTAGTCGAAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAct                                                                <  2:360501/135‑1 (MQ=21)                                                                         gtgtGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATa                                                       >  2:806767/1‑143 (MQ=255)                                                                            gcttGTCGGGGTCAATCGCAGCACTGGTGCCGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACt                                                    <  2:616995/140‑1 (MQ=255)                                                                                gTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTc                                                <  2:657472/143‑1 (MQ=255)                                                                                 tCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTTGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCa                                               >  1:874509/1‑143 (MQ=255)                                                                                    gCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTACCTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACGCTCACGATAACTGGTCAGCa                                            >  1:81104/1‑143 (MQ=255)                                                                                                 caCTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCata                               >  1:724041/1‑143 (MQ=255)                                                                                                           gTAAGACCATACATAAAGAAGCCGGGGATAATTCCTATAAGCGCTAACTTAAGGGTTTTGGTCTTCCGCCTGATATGGTTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTCGCTCGTATCGGTCAGcc                     >  2:106145/1‑143 (MQ=17)                                                                                                            tAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATACCTGGTCAGCAATTCTGGCCCATATTGGTAAGccc                    >  2:705467/1‑143 (MQ=255)                                                                                                            tAAGACCAGACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGACGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAAGTCTGGCCCAGATTCGTAAGgcc                    >  1:301802/1‑143 (MQ=17)                                                                                                                aCCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCgaag                <  1:133390/143‑1 (MQ=255)                                                                                                                   atacataTAGGAGCCGGGGATAATTCCCATAAGCGCTAGCTTAGGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAAc             <  1:576498/143‑1 (MQ=14)                                                                                                                    tacataAAAAAGCCGGGGAAAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGCTCCGCAATTCAGGCCCATATTGGTAAGCCCGAAGAACt            <  2:792750/143‑1 (MQ=255)                                                                                                                      catgAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTgg          <  1:572899/143‑1 (MQ=255)                                                                                                                       ataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCGCGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCACGACGAACTGGa         >  2:679/1‑143 (MQ=255)                                                                                                                       ataAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGa         >  1:152129/1‑143 (MQ=255)                                                                                                                        taAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCCTATTGGTAAGCCCGAAGAACTGGAt        >  1:23098/1‑143 (MQ=255)                                                                                                                              ggcgggggATAAGTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGACTTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCg  <  1:31795/139‑1 (MQ=12)                                                                                                                                               |                                                                                                                              GCCTGAATGAAGAGCAAGGTAACGTGGTTTCTCGCTTCGGTCTGAAGCTGGTTTACGGCTCTACCCTGGTGAGTGTGCTGTCTGCGTCAATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCG  >  NC_000913/2514133‑2514400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.