| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2375822 = | 1 (0.030) | 21 (0.720) | 18/276 | 0.6 | 95.6% | coding (139/963 nt) | menC | O‑succinylbenzoyl‑CoA synthase |
| ? | NC_000913 | = 2515611 | NA (NA) | intergenic (+170/+30) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase | |||||
AGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACG > NC_000913/2375680‑2375964 | atctggagcttacaggtggccattcgtgggacagtatccctgacagcctccaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcacattatacagatggttaaaccattcagtcagagcttatg < 2:263080‑M1/1‑1 (MQ=255)atctggagcttacaggtggccattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcggcttaacgaggcaccgaggcgtcgcattctacagatgtttcaacccttaagttagcgcttatg < 2:263223‑M1/1‑1 (MQ=255) gcagcttacagggggccattcgtgggacagtatcccgaacagtctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGgag > 1:329113‑M1/139‑143 (MQ=255) tGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGgaga < 1:399561/143‑1 (MQ=255) aaTGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTC < 1:287111‑M1/143‑1 (MQ=255) aggtggccattcgtgggacagtatccctgacagcctacaaaacgcacttgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaaccgttaagtgcgcgctcatgggagaccgcccgc < 1:486996‑M1/14‑9 (MQ=255) aggtggccattcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgagccgtcgcattcttcagatggttcaacccttaggttagcgcttatGGGAGGTCtccccg < 1:519630‑M1/14‑2 (MQ=255) ggccattcgtgggacagtagccctgacagcctacagaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATCTCCCCCCAcc > 2:486502‑M1/126‑143 (MQ=255) attcgttgtacattatccttgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttacgttagagcttatGGGAGATCTCCCCCCACCCTTc > 2:75247‑M1/122‑143 (MQ=255) ttcgtgggacagtatccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATATCCCCCCACCCTTcg < 2:392657‑M1/23‑1 (MQ=255) cGCCAAAGGCCACGGCAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCTAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCataagcgctaa < 2:50331‑M1/143‑12 (MQ=255) tccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACg < 2:157054‑M1/37‑1 (MQ=255) tccctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATCTCCCCCCACCCTTCGCCCTCGCCTTCACg < 1:8874‑M1/37‑1 (MQ=255) cctgacagcctacaacacgcgattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATCTCCCCCACCGCTCCGCGCTCGCCTTCACGCa > 1:461368‑M1/105‑143 (MQ=255) cctgacagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttcagttagcgcttatGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACgcc < 2:369634‑M1/39‑2 (MQ=255) ctgagggcctacagaacgcaatggaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAg > 1:385874‑M1/104‑143 (MQ=255) tCTGCGTTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCataagcgctaacttaagggttgtggtattacg < 2:310091‑M1/143‑33 (MQ=255) cagcctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCaa > 2:324030‑M1/100‑143 (MQ=255) cctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACa < 2:282480‑M1/47‑1 (MQ=255) ggTAGCTCGCAATCGCCTGCCAGCCAGTTATTTAACCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGATTCCTGACTGAAGCCCGGCAGTGGAGGGATCTCCAataagcgctaactaaagcgtagtggtacgacgcccga > 1:322556‑M1/1‑106 (MQ=255) ggTAGCTCGCAATCGCCTGCCAGCCAGTAATTTACCCAGGCAAGCAGCACCCTTTGCGCCTCTTCCCAGGTTTCCTGACTGAACCCCGGCAGTGAGGAGATCTCCCataagccctcaataaaggggggtggtattgcccccga > 1:175242‑M1/1‑106 (MQ=255) tctcaatCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCGTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCataagcgctaacttaagggttgtggtattacgcctgatatgat < 2:321311‑M1/140‑44 (MQ=255) gcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGt < 2:152099‑M1/57‑1 (MQ=255) gCAAGCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCataagcgctaacttaagggttgtggtattacgcctgatatgattt < 1:223708‑M1/143‑46 (MQ=255) gccgcCGGCCAGCCAGTTCTCCACCCAGGCAAGCAGCACGCTTTGCGCGTCTTCCCAGGTGTCCTGACCGCAGCCCGGCAGTGGGGAGGTCTCCCatatgcgctaacttaagggttgtggtattacgcctgatatgatttaac < 2:6955‑M1/141‑49 (MQ=255) ctgcctgcCAGTTCTTTACCCATGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGCCTGAAGCCCTGCAGTGTGGAGTTCTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgcc < 1:437761‑M1/143‑54 (MQ=255) agaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGtt > 2:526949‑M1/79‑143 (MQ=255) gcccgccgGTTATTTGCCTGGGCTAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCataagcgcaaacttaagggttgtggtattacgcctgatatgatttaacgtgccga < 1:380131‑M1/143‑56 (MQ=255) gccagccaGTTATTTACCCAGGCAAGCAGCACACTTGGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccga < 1:477199‑M1/143‑56 (MQ=255) aacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGtttt > 2:282217‑M1/77‑143 (MQ=255) gccgcgttgctgccccaggcaagcagcacACTTTGCGCCTCTTCCCAGGTTTCCTGACTGCAGCCCGGCAGTGGGGAGATCTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatga < 2:293568‑M1/130‑59 (MQ=255) ccagTTATTTACCCAGGCAAGCAGCACATTTTGCGCTTCTTCCCAGGTTTCCTGATTTAAGCCCGGCAGTTGGGAGTTCTCCCataaccgctaacttaagggttgttgtattacgcctgatatgatttaacgtgccgatgaat < 2:77337‑M1/143‑61 (MQ=255) ccagTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGCGATCTCCCataagcgctaccttaagggttgtggtagtacgcctgataggatttaacagcgcgcttaag > 1:174220‑M1/1‑83 (MQ=255) ttACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctca < 2:285769‑M1/143‑69 (MQ=255) tgccccgggCAAGCAGCCCACTCTGCGCCGCTTCCCAGGTCTCCTGCCTGAAGCCCGGCAGTGGGGAGATCCCCCataagcgctatcgtaacggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctca < 2:90760‑M1/140‑69 (MQ=255) ccAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCctaagcgctaacttaagggttgtggtattacgcctgatatgatttaccgtgcccatgaattcaccccacgcc > 1:377406‑M1/1‑71 (MQ=255) cgacgcaccgaggcgtcgcattcttcagattgttcaacccttaagttagcgcttacGCTAGATCTCCCCCTACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGaa > 2:482504‑M1/57‑143 (MQ=255) aaGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCCGCAGTGTTGTCGACGCCCataggcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactgg < 2:239564‑M1/143‑79 (MQ=255) agcagcACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCagaagcgctaacttgagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggt < 1:454832‑M1/143‑80 (MQ=255) gaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGAGATCTCCCCCCACCCTTCGCGCTCGCCCTCCCGCACGCACACATACAACCCGTCGCGGGACTTGATCCGCCTGTCGCGCAGCAccgcccgcg < 1:453614‑M1/96‑4 (MQ=255) acgccttgcgccTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaa < 1:390713‑M1/138‑86 (MQ=255) acTGTGCTCCTCTTCCCAGGTTTCCTGACTGAACCCCGGCAGTGGGGAGATCTCCCataagcgctaacttaagggttgtggtattacgcctgatatgagttaacgtgccgatgaattactctcacgataactggtcagcaatt < 1:412434‑M1/143‑88 (MQ=255) tGCGCCTCTTCCCCGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCataagcgctatcttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctgg < 1:219556‑M1/143‑92 (MQ=255) tGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctgg < 2:298182‑M1/143‑92 (MQ=255) gcgcCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGAGGGGAGATCTCCCataagcgctaacttaagggatgtggtattccgcctgatatgatttaacgtgccgatgaattactcacacgataacgagtcagccattctcgc > 1:149519‑M1/1‑51 (MQ=255) gcgcCTCTGCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggc < 2:483993‑M1/143‑93 (MQ=255) cattcttcagatggttcaacccttaagttagcgcttatGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTCACCGCCTGTCGCGCAGAACCACCcccgcgtgcaggg < 2:463858‑M1/105‑7 (MQ=255) cattcttcagatggtccaacccttaagttagcgcttatGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATgg > 2:8725‑M1/39‑143 (MQ=255) tCCCAGGTTTCCGGACTGAAGCCCGGCAGTGGGGAGATCTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattg < 2:269989‑M1/143‑101 (MQ=255) tCCGGACTGAAGCCCGGCAGTGGGGAGATCTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccg < 1:289503‑M1/143‑110 (MQ=255) cttaagttagcgcttatGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGATTTTAACCGCCTGTCGCGCAGAACCACACACGCGGGCATGGGGATCTGCAAGCGGTATACCt < 2:263616‑M1/126‑1 (MQ=255) aaGCCCGGCAGTGGGGAGATCCCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactgg < 2:75876‑M1/143‑119 (MQ=255) aaGACCGGCAGTGGGGAGATCTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactgg < 1:276785‑M1/143‑119 (MQ=255) cAGTGGGGAGATGTCCCataagcgctaacttaagggtggtggcattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaagaactggatacttcg < 2:416197‑M1/143‑127 (MQ=255) ttatgggAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGTGATCTGCCAGCGGTATCACAGCGCCCTAAGcct > 1:46227/5‑141 (MQ=255) gggAGATCTCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattctggcccatattggtaagcccgaaggactggagacataggcacg > 2:459972‑M1/1‑12 (MQ=255) | AGTTCTGCCAATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCCCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACG > NC_000913/2375680‑2375964 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |