New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2375822 =	1 (0.030)	21 (0.720)	18/276	0.6	95.6%	coding (139/963 nt)	menC	O‑succinylbenzoyl‑CoA synthase
	?	NC_000913	= 2515611	NA (NA)					intergenic (+170/+30)	insL1/yfeA	IS186 transposase/putative diguanylate cyclase

AGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCG‑ACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTCCGCGAC  >  NC_000913/2515476‑2515748                                                                                                                                        |                                                                                                                                           aGCCTACAGGTGGCCATGCGTGGGACAGTATCCCTGACAGCCTGCAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATaa                                                                                                                                     <  1:77789/143‑1 (MQ=9)              tcATTGGTGGGACAGTGTCCCTGACAGCCTACAAAGCGCAAGTGAGGAACGCGAGGCATCGTCTTAACGAGGCAGCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttttt                                                                                                                        <  2:87274/142‑1 (MQ=14)              ccACTCGTGGGACAGTATCCCTGCCAGACTGCAGAGCGCAATTGCAGAGCGCGAGGCATCGGCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttttt                                                                                                                        <  1:250051/143‑1 (MQ=14)               cATTCGTGGGACAGTATCACTGACAGCCGACAAAACGCTATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACTCTTAAGTTAGCGCTTATGGGATAATTCCCCGGtttttt                                                                                                                       <  1:164163/143‑1 (MQ=255)                agtCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttttttt                                                                                                                      <  2:164798/141‑1 (MQ=255)                           aGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTaa                                                                                                           >  2:201160/1‑143 (MQ=255)                                        gCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGAGGGTTCAACCCTTAAGTTAGCGCTTCTGGGATCATTCCCCGGTTTTTTTACGCCTGCTACTCCGCTACTGGCt                                                                                              >  1:378331/1‑143 (MQ=14)                                            aCAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATCATCCCCCGGTTTTTTCACGCCTGTTCATCCGCTAACGGcctctg                                                                                          >  1:488918/1‑138 (MQ=14)                                             cagagcGCAATTGAAGAACGCTAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCggg                                                                                         <  2:315533/138‑1 (MQ=255)                                                    cgatggaagtaCGGGAGGCATAGTCTTAACGAGGGACAGTGGTGTCGTATTCTTTTGGTGGTTGACCGCTGTAGTTAGCGCTTATGGGATAATTCCTCGGTTTTTTTACGCCTGTTAAGCAGCTAATGGCTGCGGGCG‑ACCaa                                                                                 <  1:132838/138‑1 (MQ=255)                                                    cAATTGAGGACCGCGAGGCATCGTGTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCG‑ACCaa                                                                                 <  1:217585/143‑1 (MQ=255)                                                      aTTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGCCG‑ACCAATc                                                                               >  1:495933/1‑143 (MQ=255)                                                       ttGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTGCAACGCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCG‑AGCatgca                                                                              >  1:1828/1‑139 (MQ=255)                                                        tGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAGTGGCTGCGGGCG‑ACCAATCaa                                                                             <  2:399215/143‑1 (MQ=255)                                                           agaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGAGTTTTTACGCCTGTTAATCAGCTAATAGCT‑CGGGCGCACCCATCCAATa                                                                          >  1:345276/1‑143 (MQ=18)                                                             aaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCG‑ACCAGTCAAATAcc                                                                        >  2:484911/1‑143 (MQ=255)                                                                gcgAGGCATCGTCGTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTGTTGACTCCTTTTAAGCAGCTAATGGCTGCGGGCG‑ACCAATCAAATACCCtt                                                                     <  2:331739/143‑1 (MQ=21)                                                                        tCGTCTTAACGAGGCACCGAGGCGTCGCATTCTACAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCG‑ACCAATCAAATACCCTTGCAGatat                                                             <  2:47323/143‑1 (MQ=255)                                                                                     gCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCG‑ACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCt                                                >  2:205105/1‑143 (MQ=255)                                                                                       aCCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCG‑ACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTa                                              >  2:416842/1‑143 (MQ=255)                                                                                                tCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTACTCAGCTAATGGCTGCGGGCG‑ACCAATCAAATACCCTTGCAGATATTGCACCCCGCGCTTATGCAATAgc                                     >  1:332865/1‑143 (MQ=255)                                                                                                        ttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACTCCTGTTAATCAGCTACTGGCTGCGGGCG‑ACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCTATAGCGCctgcgg                             >  1:74494/1‑141 (MQ=255)                                                                                                             aTGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTACTCAGCTAATGTCTGCGGTCG‑ATCAATCATATACCCTTGCAGATATTGCCCACTGGCCCTATCCATTCGCGCCTGCTCCTCtt                        >  1:279020/1‑143 (MQ=25)                                                                                                               ggTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTGTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCG‑ACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGc                      <  2:334040/143‑1 (MQ=255)                                                                                                                       ccttcggTTCGCGCTTATGGGATCATTCCCCGGTTTTGTTACCGCCGCTAATCAGCTAATGGCTGCGGGCG‑ACCAATCAAATTCCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCTAc              <  1:32988/137‑1 (MQ=255)                                                                                                                         ttAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCG‑ACCACTCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACaa            >  2:103095/1‑143 (MQ=255)                                                                                                                              ttatctcTTATGGGATAATTCCCCGGTTTTGTTACGCCTGTTAATCAGCTAATGGCTGCGGGCG‑ACCAATCAAATACCCTCGCAGATATTGCACCACGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTcc       <  2:386828/137‑1 (MQ=255)                                                                                                                                 gcgcTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCG‑ACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTCcgcg    <  2:98208/143‑1 (MQ=255)                                                                                                                                   gcTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATCGCTGCGGGCG‑ACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATTCACTACCGACTGATTTGGGTGTGTTTCGAACAGCTCCGCGAc  >  1:366639/1‑143 (MQ=255)                                                                                                                                        |                                                                                                                                           AGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCG‑ACCAATCAAATACCCTTGCAGATATTGCACCCCGAGCTTATGCAATAGCGCCTGCTGCTGTTGCGTCTCGACAAACTCCGCGAC  >  NC_000913/2515476‑2515748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.