| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,311 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909311 | 3910084 | 774 | 27 [0] | [0] 27 | [pstA]–[pstC] | [pstA], [pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909310 | 0 (0.000) | 24 (0.840) | 21/270 | 0.3 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910085 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
ACATGATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTC > NC_000913/3909944‑3910224 | attaacagcccgctacccgccagagcgttcgccagaccaccaccttccgcattgggcggcggcgtcatatcagtggacagcgccagcgacataccgccgatacggagagtgaggaggcacattaaaatcacgaccagccaggc > 1:190370‑M2/142‑143 (MQ=255) ccgctacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgaacgccacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCtca < 1:252987‑M2/11‑1 (MQ=255) agagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAgg < 2:89671‑M2/23‑1 (MQ=255) agcgttcgccagcccaccaccgtccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGc < 1:76091‑M2/25‑1 (MQ=255) gccagacaaccacctgccggattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcaataccgcgagtgatggtggacattaaaatcaagatcagccgaGCGCaagctcagtcaggaaagtggacctgccc > 1:337106‑M2/112‑130 (MQ=255) cagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGACCAGGGCGATACCGaa > 1:340746‑M2/110‑143 (MQ=255) ccaccttccgtattggtcggcggcgtcatttcagttaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaacatcccgatcagccagGCGCACGCTCAGTCAGGAACAGGGCGATACCGAAACTCAcc < 1:346294‑M2/41‑1 (MQ=255) caccttccgtattgggcggcggcgtcatttcagtaaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCCAAACTCACCg > 1:133078‑M2/102‑143 (MQ=255) gttgggcggcggcgtcattgcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGAt < 2:211083‑M2/52‑1 (MQ=255) attgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGCAACTCACCGGGACGGCGAt > 1:181401‑M2/92‑143 (MQ=255) attgggcggcggcgtcatttcagtgaacagcgccagcgacataccggcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGAt < 2:64167‑M2/52‑1 (MQ=255) tgggcggtggcgtcattttagtgaacagcgccagcgacgtaccgtcgataccgcgagtgatggtggacattaaaatccaggtcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATca < 1:350383‑M2/54‑1 (MQ=255) cggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGACAAGGACCATACCGAAACTCACCAGGACGGCGATcagcag > 1:422764‑M2/86‑143 (MQ=255) tttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGACACTCACCGGGACGGCCATCAGCAGCGCGCTAGACg > 1:462892‑M2/75‑143 (MQ=255) gcaagcgtcttaccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTa < 2:293925‑M2/83‑1 (MQ=255) ccagcgtcataccgtcgatagcgcgagggagggtggacattaaaagccatatgggccagGCGCAAGCTCCGTCAGGAACGGGGTGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTAc < 1:523937‑M2/84‑1 (MQ=255) ataccgtcgataccgcgagtgatggtggacattcaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGAGACGGCGACCAGCAGCGCGATAAAcaaagtcaccaaccagccaccacgc > 1:49845‑M2/52‑131 (MQ=255) cgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGACCAGGGCGATACCGAAACTCACCGAGAAGTAGTTCAGCAGCGCGATAAACGAAGTCACCATCGTACCGTAGATAGGCa > 2:219244‑M2/48‑143 (MQ=255) tcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATAACGAAATTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCGGCAACGTACCGTAGATCGGCAcc > 2:263248‑M2/46‑143 (MQ=255) tggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGAAGacat > 1:428072‑M2/30‑143 (MQ=255) attaaaatcaagatcagcgtgTCGCAAGCTTAGTCAGCAACAGGGCGATACCGAAACTCACCGGGACGGCGCTCAGCAGCGCGATAAACGAAGCCACCACCGTACCGTAGATCGGCACCAGCGCCCCGTAGAactcgtgccgc > 1:347357‑M2/22‑138 (MQ=255) taacgtccggatcagccacGCGCAAGCTCCGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGc < 2:188913‑M2/124‑1 (MQ=255) aaatccagatcagccagTCGCAAGCTCAGTCAGGAACAGGGCGATCACCAATCTCACCGAAACGATGGACAGCAGTACTATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCAt < 2:266795‑M2/126‑1 (MQ=255) cagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTCGATATCGATCGGTGCATCCCAc > 1:411717‑M2/13‑143 (MQ=255) gccagGCGCAAGCTCAGTCAGGAGCAGGGCGATACCGATCCGCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTgg < 2:166096‑M2/138‑1 (MQ=255) gccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTgg < 2:232001‑M2/138‑1 (MQ=255) cagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGAGCGAGGAACGGGGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTc > 2:471689‑M2/4‑143 (MQ=255) | ACATGATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTC > NC_000913/3909944‑3910224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |