Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,909,311 Δ774 bp [pstA][pstC] [pstA], [pstC]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3909311 3910084 774 27 [0] [0] 27 [pstA]–[pstC] [pstA], [pstC]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 39093100 (0.000)24 (0.840) 21/270 0.3 100% coding (129/891 nt) pstA phosphate ABC transporter permease
?NC_000913 3910085 = 0 (0.000)coding (313/960 nt) pstC phosphate ABC transporter permease

ATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCC  >  NC_000913/3909170‑3909450
                                                                                                                                            |                                                                                                                                            
aTTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGCATTGGGCGGCGGCGTCATATCAGTGGACAGCGCCAGCGACATACCGCCGATACGGAGAGTGAGGAGGCACATTAAAATCACGACCAGCCAGgc                                                                                                                                            >  1:190370‑M1/1‑141 (MQ=255)
         ccGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGAACGCCACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctca                                                                                                                                   <  1:252987‑M1/143‑12 (MQ=255)
                     agagCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagg                                                                                                                       <  2:89671‑M1/143‑24 (MQ=255)
                       agCGTTCGCCAGCCCACCACCGTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggc                                                                                                                     <  1:76091‑M1/143‑26 (MQ=255)
                              gCCAGACAACCACCTGCCGGATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCAATACCGCGAGTGATGGTGGACATTAAAATCAAGATCAGCCGAgcgcaagctcagtcaggaaagtggacctgccc                                                                                                              >  1:337106‑M1/1‑111 (MQ=255)
                                cAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaccagggcgataccgaa                                                                                                            >  1:340746‑M1/1‑109 (MQ=255)
                                       ccaccTTCCGTATTGGTCGGCGGCGTCATTTCAGTTAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAACATCCCGATCAGCCAGgcgcacgctcagtcaggaacagggcgataccgaaactcacc                                                                                                     <  1:346294‑M1/143‑42 (MQ=255)
                                        caccTTCCGTATTGGGCGGCGGCGTCATTTCAGTAAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgatacccaaactcaccg                                                                                                    >  1:133078‑M1/1‑101 (MQ=255)
                                                  gttgGGCGGCGGCGTCATTGCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgat                                                                                          <  2:211083‑M1/142‑53 (MQ=255)
                                                  aTTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgcaactcaccgggacggcgat                                                                                          >  1:181401‑M1/1‑91 (MQ=255)
                                                  aTTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGGCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgat                                                                                          <  2:64167‑M1/143‑53 (MQ=255)
                                                    tGGGCGGTGGCGTCATTTTAGTGAACAGCGCCAGCGACGTACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGGTCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatca                                                                                        <  1:350383‑M1/143‑55 (MQ=255)
                                                        cggcggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggacaaggaccataccgaaactcaccaggacggcgatcagcag                                                                                    >  1:422764‑M1/1‑85 (MQ=255)
                                                                   tttCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgacactcaccgggacggccatcagcagcgcgctagacg                                                                         >  1:462892‑M1/1‑74 (MQ=255)
                                                                                 gcaagcgTCTTACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgta                                                           <  2:293925‑M1/140‑84 (MQ=255)
                                                                                  ccAGCGTCATACCGTCGATAGCGCGAGGGAGGGTGGACATTAAAAGCCATATGGGCCAGgcgcaagctccgtcaggaacggggtgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtac                                                          <  1:523937‑M1/143‑85 (MQ=255)
                                                                                          aTACCGTCGATACCGCGAGTGATGGTGGACATTCAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgagacggcgaccagcagcgcgataaacaaagtcaccaaccagccaccacgc                                                  >  1:49845‑M1/1‑51 (MQ=255)
                                                                                              cGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaccagggcgataccgaaactcaccgagaagtagttcagcagcgcgataaacgaagtcaccatcgtaccgtagataggca                                              >  2:219244‑M1/1‑47 (MQ=255)
                                                                                                tCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataacgaaattcaccgggacggcgatcagcagcgcgataaacgaagtcggcaacgtaccgtagatcggcacc                                            >  2:263248‑M1/1‑45 (MQ=255)
                                                                                                                tggtggACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgaagacat                            >  1:428072‑M1/1‑29 (MQ=255)
                                                                                                                        aTTAAAATCAAGATCAGCGTGtcgcaagcttagtcagcaacagggcgataccgaaactcaccgggacggcgctcagcagcgcgataaacgaagccaccaccgtaccgtagatcggcaccagcgccccgtagaactcgtgccgc                    >  1:347357‑M1/1‑21 (MQ=255)
                                                                                                                          taacgtccggaTCAGCCACgcgcaagctccgtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgc                  <  2:188913‑M1/138‑125 (MQ=255)
                                                                                                                            aaaTCCAGATCAGCCAGtcgcaagctcagtcaggaacagggcgatcaccaatctcaccgaaacgatggacagcagtactataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcat                <  2:266795‑M1/143‑127 (MQ=255)
                                                                                                                                 cAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtcgatatcgatcggtgcatcccac           >  1:411717‑M1/1‑12 (MQ=255)
                                                                                                                                        gCCAGgcgcaagctcagtcaggagcagggcgataccgatccgcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttgg    <  2:166096‑M1/143‑139 (MQ=255)
                                                                                                                                        gCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttgg    <  2:232001‑M1/143‑139 (MQ=255)
                                                                                                                                          cAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagagcgaggaacggggtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatcccactctttggtc  >  2:471689‑M1/1‑3 (MQ=255)
                                                                                                                                            |                                                                                                                                            
ATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTAGCGTGCCCCC  >  NC_000913/3909170‑3909450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: