New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1397238	NA (NA)	25 (1.180)	21/284	0.1	96.2%	intergenic (+146/‑127)	insH1/ynaJ	IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein
	?	NC_000913	1755755 =	1 (0.050)					coding (58/1413 nt)	pykF	pyruvate kinase I

GGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAG‑AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1397098‑1397238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATA  >  NC_000913/1755755‑1755896                                                                                                                                                                                                                                                                                              GGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAG‑AAAAAATCGGCTCCAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAAATTAACCGCTTAATCACACATTCCTT                                                                                                                                              >  1:175965/1‑143         tGCCTTAATTGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACTGGAG‑AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTAAAA                                                                                                                                      <  1:273143/142‑1             TTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAG‑AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTAAAATGCT                                                                                                                                  >  1:159755/1‑143             TTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAG‑AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTAAAATGCT                                                                                                                                  >  2:380326/1‑143              TAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAG‑AAAAAATCGGCTCAAACATGAAGATATGAAATTACTGAGTCAGCAGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTAAAATGCTG                                                                                                                                 <  1:99068/143‑1               AAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGTGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTAAAATGCTG                                                                                                                                 <  1:191934/143‑1               AAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAG‑AAAAAATCGGCTCAAACATGAAGAAGTGTGTTGCCACAAACAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTAAAATGCTGG                                                                                                                                >  1:82344/1‑143                                         GCTGATTCAAGGCATTTACGGGAG‑AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTAAGCAGAGAAGAATTTACCCGCTTAATAGGAACTTCCTTAGCTAAAATGCGGGACGCTGGCATGAACGTTGTGggggtg                                                                                                      >  2:215336/1‑137                                               TCAAGGCATTTACGGGAG‑AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCATAACTAAAATGCTGAACGCTGACATGAACGAAAAGCGCCTGAACagc                                                                                                >  1:270816/1‑140                                                 AAGTCATTTACGGAAG‑AAACATTCGGCTCATACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTGCCCCGCTTATTCGCACCTTCCTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTC                                                                                              <  1:156295/143‑1                                                    GCATTTACGGGAG‑AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAAACAGCCGAGAAGAATATCCCCGGTTATTCGCAACTTACTTAGCTAAAATGCTGGACGCTAGCCTGAACGTTATACGTCTTAACTTATCTCA                                                                                           >  2:170350/1‑143                                                       TTTACGGGAG‑AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCAAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTATGAACTTCTCTCAAGG                                                                                        >  2:284950/1‑143                                                        caacgtgtG‑AAAAGATCGTCTCAAAGTTGAAGAAATGAAATGACGGAGTCAGCCGAGAAGAATTTCCCCGCTTAGTCGCACCTTCCTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGT                                                                                       <  2:284223/135‑1                                                                             TCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTAAAATGCTGGCCGCTGGCATGACCGTTATGCGTCTGAAATTCTCTCATAGAGACTATGCAAAACACGGTaa                                                                   >  1:127595/1‑141                                                                                             GAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCATTAGCCAAAATGCTGCACGCTGGCATGAACGTTATGCGTCTGAACTCATCTCATGGTGACGATGCAGAACACGCGCAGCCGATTCAGAATCcg                                                   >  2:374095/1‑141                                                                                              AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGC                                                  <  1:260392/143‑1                                                                                                       AGTCAGCCGAGAAGAAGTTCCCCGCTTATTCGCACCTTCCTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGA                                         <  2:151389/143‑1                                                                                                         gCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATG                                       <  2:82344/142‑1                                                                                                                  AAGATTTTCGCCGCTTATTCGCCCCTTCCTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTAACTATGCAGAACACGGTCAGCGCAGTCAGAACCTGCGCAACGTGATGAGCAAAACa                              >  2:358793/1‑142                                                                                                                     AATTTCCCCGCTTATTCGCACCTTCCTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGT                           <  2:225426/143‑1                                                                                                                                     CGCACCTTCCTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAAACGCCGCTATCa           >  2:16709/1‑142                                                                                                                                         tCTTCCTTAGCTACGATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCTGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCT       <  2:240599/142‑1                                                                                                                                            gCCTTAGCTAGAGTGCTGGACGCGGGCGTGAACGTTTTGCGTCTGAACTTCTCTCATGGTGACTGTGCAGAACGCGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGA    <  2:151026/142‑1                                                                                                                                              CTTAGCTAAAGTGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTAAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATA  <  1:158357/143‑1                                                                                                                                              CTTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATA  <  1:198928/143‑1                                                                                                                                                                                                                                                                                              GGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAG‑AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1397098‑1397238 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGCTAAAATGCTGGACGCTGGCATGAACGTTATGCGTCTGAACTTCTCTCATGGTGACTATGCAGAACACGGTCAGCGCATTCAGAATCTGCGCAACGTGATGAGCAAAACTGGTAAAACCGCCGCTATCCTGCTTGATA  >  NC_000913/1755755‑1755896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.