New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1397238	NA (NA)	25 (1.180)	21/284	0.1	96.2%	intergenic (+146/‑127)	insH1/ynaJ	IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein
	?	NC_000913	1755755 =	1 (0.050)					coding (58/1413 nt)	pykF	pyruvate kinase I

ATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATG  >  NC_000913/1397102‑1397373                                                                                                                                         |                                                                                                                                        aTACCGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCAGCACAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCAGCTTATTCGCACCTTCCctaact                                                                                                                                   >  2:250955/1‑143 (MQ=2)      gCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCGCCGCTTATTCGCACCTTCCCTAACTAAtga                                                                                                                              >  2:236071/1‑141 (MQ=17)                  gaagaaACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCAACTTCCCTAACTAATCAATGCGTTGATTg                                                                                                                  >  1:312566/1‑143 (MQ=255)                             cTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCt                                                                                                       <  1:159057/143‑1 (MQ=255)                                  tatgCTGATTTAAGGCATTTACGGGAGAAAAAATCGGCTCCTCCTTGGAGGAGTGAAATGAGTGAGTCAGCCCAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAagag                                                                                                  <  1:257308/140‑1 (MQ=18)                                     gCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATAAAATGACTGAGTCAGCAGAGACAAATTTCCCCGCTTATTCGCACCTTACCTAACTCATAAATGCATTAATTGTAAATccctacaattgatg                                                                                               >  2:162974/1‑131 (MQ=14)                                       tGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGCATGTAAATCCAGCTAAgaggtgac                                                                                             >  2:127203/1‑142 (MQ=255)                                                      aCGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCTCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTATAAATCCAGCTAAGAAGTGAGGTATTCAGAGCAGAc                                                                              >  1:100155/1‑143 (MQ=255)                                                                         cAAACATGAAGAAATGAAATGCCTGAGTCAGCTGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGt                                                           <  2:279120/143‑1 (MQ=255)                                                                                    caacgaaatgaCTTAGTCATCCGATAAGAACTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCATCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGtt                                                <  2:347247/139‑1 (MQ=38)                                                                                                   gTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACATTCCCTAACTAATAAATGCGTTGATTGTAAATGCAGCTAAGAGGAGAGGTTCTCAGAGCAGACAAAGGTGAAATGTCATGGTATTGTTACGTGTAGGTAACaacatgt                                 >  2:219180/1‑138 (MQ=37)                                                                                                    tCAGCCGAGAAGAATTTCCACGCTTATTCGCACCTACCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTAAGGTTTTCAGAGCAGACAACGGTGAAATGTCAAGGTATTGTTACGTTTAGGTAACAAGAAAtt                                >  2:32936/1‑143 (MQ=255)                                                                                                       gCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGt                             <  1:316389/143‑1 (MQ=255)                                                                                                        ccGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTACGAGGTGAGGTTTTCAGAGCAGACATCGGTGAACTGTCATGCTATTGTTACGTTTAGGtaataatgattctgtc                            >  1:373682/1‑133 (MQ=38)                                                                                                                    tcctagCTTATGCGAACCTTTCCTAACTTATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATTGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGAtt                <  2:32266/138‑1 (MQ=255)                                                                                                                                  ctctttCTCTATCTATTCAATGCGTTGATTGTAAATCTAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATg  <  2:308528/139‑1 (MQ=255)                                                                                                                                         |                                                                                                                                        ATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATG  >  NC_000913/1397102‑1397373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.