New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =4 (0.190)13 (0.690) 9/252 0.8 79.9% coding (290/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 1209619 = 3 (0.160)pseudogene (1/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

TGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGC  >  NC_000913/1207649‑1207931
                                                                                                                                             |                                                                                                                                             
tggtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGGGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT                                                                                                                                              <  1:381503‑M1/143‑1 (MQ=255)
tggtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT                                                                                                                                              <  1:226928‑M1/143‑1 (MQ=255)
 gcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttattcattttcataaacgTTg                                                                                                                                             <  2:261214‑M1/3‑1 (MQ=255)
        gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAACTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCACGGTTTGGG                                                                                                                                      >  2:359753‑M1/1‑143 (MQ=255)
              cattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcctgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg                                                                                                                                <  1:215229‑M1/16‑1 (MQ=255)
               attacgttgtagatatgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaataactggatctattgcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTAGTTTGGGAGAAGGa                                                                                                                               <  2:309215‑M1/17‑1 (MQ=255)
                  ccAGCCTGGAGAAGGGGCGGCACGACCAGTTATTTACCTCAGGTCGCGGGCTGCTGTTAAGCCGCAAGAATCCGTTTGTCGATATCAAATCGGATGGCACTTTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCa                                                                                                                            >  2:334048/1‑143 (MQ=17)
                   cAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg                                                                                                                           <  2:379460‑M1/143‑6 (MQ=255)
                    ggcCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCACTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGCTATCTGTGTTTTGGTAGAAGGctctgc                                                                                                                          <  2:228294‑M1/142‑7 (MQ=255)
                    aggctgtAGAGGGGGCGGCACGACCAGTTACTTACCGGACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc                                                                                                                          <  2:345562‑M1/140‑7 (MQ=255)
                     ttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaatcaggaatgatgccctttccttgttctttcttcattttcataaaatTTGGAATAGTAAAAGGAgcaaca                                                                                                                         <  1:225402‑M1/23‑3 (MQ=255)
                        tGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGCAGAAGGgcctgcatta                                                                                                                      >  2:17620‑M1/1‑133 (MQ=255)
                          gagagtgggCTGTACGACAAGTTACTTACCGCACTTCGCGCGCGGCTGTTAAGCCGCAAGAATCCGTTTGGCGATTTCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                    <  2:177595/137‑1 (MQ=18)
                            tctgtttgtgggtcatttggtgctatgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttagttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATg                                                                                                                  >  2:310821‑M1/114‑143 (MQ=255)
                                gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATACCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTGTGGGAGAAGGctatgcagtaccagttgg                                                                                                              >  2:96110‑M1/1‑125 (MQ=255)
                                 gtcggcacGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAATCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCACGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt                                                                                                             <  1:7572‑M1/141‑20 (MQ=255)
                                          atttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttgtttcttcattgtcataaacgGTGGTTTGGTAGAAGAAGCaaaacacaatgaagccacagcaaaa                                                                                                    <  1:141029‑M1/44‑11 (MQ=255)
                                              gttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATtat                                                                                                <  1:385635‑M1/48‑2 (MQ=255)
                                                          acatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttattcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCATCTACGGCTCAATTAGGACGCAccggct                                                                                    <  2:259031‑M1/60‑3 (MQ=255)
                                                                     tgctgTTAAGCCGCAAGAATCCGATTGGCGATGGCGAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaaca                                                                         >  2:335348‑M1/1‑88 (MQ=255)
                                                                           tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgaattacctgatgatgtccagattccgtggccttcagacactacgcaaacagggtgg                                                                   >  1:21855‑M1/1‑82 (MQ=255)
                                                                              aaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGATTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGCTATg                                                                <  2:247070‑M1/80‑1 (MQ=255)
                                                                                          ctctttgatttttCAAATCTTATGTCACTTTGCAAACGTCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt                                                    <  1:46796/131‑1 (MQ=255)
                                                                                                    tatCACATCGGATGGCGCTCTGCATACGGCTCTCGAAAGCCTTGGTTTGGGAGAAGGctctgcattacccgttggtgtcccggttccgtggcctttagccactccgccaacaggctggctgaaatgcaatggtgccgcttttt                                          <  2:258163‑M1/143‑87 (MQ=255)
                                                                                                       ggtgtgatgtgcttgttatttcttcatttgcataagcgTGGGTTTGGTAGAAGGAGCAAAACGCAATGCAGCAACGGCTATATTAGGACGGATCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGTGCAATCAGTaa                                       >  2:245088‑M1/39‑143 (MQ=255)
                                                                                                                    tgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg                          <  2:42733‑M1/118‑1 (MQ=255)
                                                                                                                          cAAACGGCTCTCGAAAACCTTGTTTTGGGAGAAGGctctgcattacctgtttttgtcccgtttccttggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaact                    <  1:17620‑M1/143‑109 (MQ=255)
                                                                                                                             tcgtctctcgaaAACCTTGGTTCGGGAGAAGGctctgcattccctgttggtgtcccggttccgtggccttccgccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggc                 <  2:209185‑M1/139‑112 (MQ=255)
                                                                                                                              tcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc                <  2:83720‑M1/128‑1 (MQ=255)
                                                                                                                                gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaa              >  1:85245‑M1/1‑29 (MQ=255)
                                                                                                                                     cataaaCCTTGGTTTGGGTGAAGGAGCAATACTCATTGTAGCAACGGCTATATTATGACGCACCGGTTTCATAGCTATACAGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAg         <  1:105805/140‑1 (MQ=255)
                                                                                                                                          acgTTGGTGTGGCAGAAGGAGCAAAACTTGCTGCAGCAACGGCGACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAagcagct    >  2:136559‑M1/4‑140 (MQ=255)
                                                                                                                                            gTTGGTTTTCAAGAAGAAGCAAAACTCAATGCAGTATCTGCTACATTAGGACGCACCGGTTTCATAGCTATAACGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc  >  1:123485‑M1/2‑143 (MQ=255)
                                                                                                                                            gTTGGTTCGGGAGACGGAGCTAAACTCAATGCAGCACCGGCTACATTAGGACGCGCCGGTTTCATAGCTATACCGGTTATTATTTGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc  >  2:20293‑M1/2‑143 (MQ=255)
                                                                                                                                             |                                                                                                                                             
TGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGC  >  NC_000913/1207649‑1207931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.