New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =4 (0.190)13 (0.690) 9/252 0.8 79.9% coding (290/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 1209619 = 3 (0.160)pseudogene (1/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

GTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGC  >  NC_000913/1209477‑1209758
                                                                                                                                              |                                                                                                                                           
gcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccgttatagctatgaaaccggtgcgtcctaatgtagcagatactgcattgagttttgcttcttcttgaaaaccaac                                                                                                                                             >  1:123485‑M2/143‑143 (MQ=255)
gcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccacaaataataaccggtatagctatgaaaccggcgcgtcctaatgtagccggtgctgcattgagtttagctccgtctcccgaaccaac                                                                                                                                             >  2:20293‑M2/143‑143 (MQ=255)
 tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACg                                                                                                                                            >  1:261214/1‑143 (MQ=255)
 tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGACCGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCGCCCAAACCAACg                                                                                                                                            >  1:339505/1‑143 (MQ=255)
  agctgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtcgccgttgctgcagcaagttttgctccttctgccacaccaaCGt                                                                                                                                           >  2:136559‑M2/141‑143 (MQ=255)
              ggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATga                                                                                                                               <  2:83720‑M2/15‑1 (MQ=255)
                        ccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa                                                                                                                     <  2:42733‑M2/25‑1 (MQ=255)
                                     ttactgattgcacaataccaccaatcataaccggtatagctatgaaaccgatccgtcctaatatagccgttgctgcattgcgttttgctccttctaccaaacccaCGCTTATGCAAATGAAGAAATAACAagcacatcacacc                                                                                                        >  2:245088‑M2/106‑137 (MQ=255)
                                                              catagccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctccccaatcaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt                                                                               <  2:247070‑M2/63‑1 (MQ=255)
                                                                              gggatGGCTGAGGGGTACGGAGCCGGGACACCAACAGGTAATGCAGAGCCTTGTCCCAAACCAACGTTTGCGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGGTTTTACCTGGGGGATTTAACATGCTTATTGGCt                                                               <  2:91828/139‑1 (MQ=255)
                                                                                  agccggtgcgtcctaattgagccgtagatgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAATAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGt                                                           <  2:259031‑M2/83‑1 (MQ=255)
                                                                                              ataatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac                                               <  1:385635‑M2/95‑1 (MQ=255)
                                                                                                  ttttgctgtggcttcattgtgttttgcttcttctaccaaaccacCGTTTATGACAATGAAGAAACAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt                                           <  1:141029‑M2/99‑1 (MQ=255)
                                                                                                                cattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAACTAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCATAGcaccaaatgacccacaaacaga                             >  2:310821‑M2/31‑133 (MQ=255)
                                                                                                                       tgttgctccttttactattccaaATTTTATGAAAATGAAGAAAGAACAAGGAAAGGGCATCATTCCTGATTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa                      <  1:225402‑M2/120‑1 (MQ=255)
                                                                                                                             tccttctcccaaactaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCAATAGATCCAGTTATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACATATCTACAACGTAAt                <  2:309215‑M2/126‑1 (MQ=255)
                                                                                                                              ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAGGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATg               <  1:215229‑M2/127‑1 (MQ=255)
                                                                                                                                           caaCGTTTATGAAAATGAATAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGc  <  2:261214‑M2/140‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                           
GTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGC  >  NC_000913/1209477‑1209758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.