New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1207790 =	4 (0.190)	13 (0.690)	9/252	0.8	79.9%	coding (290/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	1209619 =	3 (0.160)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

GTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGC  >  NC_000913/1209477‑1209758                                                                                                                                               |                                                                                                                                            gcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccgttatagctatgaaaccggtgcgtcctaatgtagcagatactgcattgagttttgcttcttcttgaaaaccaac                                                                                                                                             >  1:123485‑M2/143‑143 (MQ=255) gcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccacaaataataaccggtatagctatgaaaccggcgcgtcctaatgtagccggtgctgcattgagtttagctccgtctcccgaaccaac                                                                                                                                             >  2:20293‑M2/143‑143 (MQ=255)  tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACg                                                                                                                                            >  1:261214/1‑143 (MQ=255)  tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGACCGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCGCCCAAACCAACg                                                                                                                                            >  1:339505/1‑143 (MQ=255)   agctgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtcgccgttgctgcagcaagttttgctccttctgccacaccaaCGt                                                                                                                                           >  2:136559‑M2/141‑143 (MQ=255)               ggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATga                                                                                                                               <  2:83720‑M2/15‑1 (MQ=255)                         ccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa                                                                                                                     <  2:42733‑M2/25‑1 (MQ=255)                                      ttactgattgcacaataccaccaatcataaccggtatagctatgaaaccgatccgtcctaatatagccgttgctgcattgcgttttgctccttctaccaaacccaCGCTTATGCAAATGAAGAAATAACAagcacatcacacc                                                                                                        >  2:245088‑M2/106‑137 (MQ=255)                                                               catagccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctccccaatcaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt                                                                               <  2:247070‑M2/63‑1 (MQ=255)                                                                               gggatGGCTGAGGGGTACGGAGCCGGGACACCAACAGGTAATGCAGAGCCTTGTCCCAAACCAACGTTTGCGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGGTTTTACCTGGGGGATTTAACATGCTTATTGGCt                                                               <  2:91828/139‑1 (MQ=255)                                                                                   agccggtgcgtcctaattgagccgtagatgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAATAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGt                                                           <  2:259031‑M2/83‑1 (MQ=255)                                                                                               ataatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaac                                               <  1:385635‑M2/95‑1 (MQ=255)                                                                                                   ttttgctgtggcttcattgtgttttgcttcttctaccaaaccacCGTTTATGACAATGAAGAAACAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt                                           <  1:141029‑M2/99‑1 (MQ=255)                                                                                                                 cattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAACTAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCATAGcaccaaatgacccacaaacaga                             >  2:310821‑M2/31‑133 (MQ=255)                                                                                                                        tgttgctccttttactattccaaATTTTATGAAAATGAAGAAAGAACAAGGAAAGGGCATCATTCCTGATTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa                      <  1:225402‑M2/120‑1 (MQ=255)                                                                                                                              tccttctcccaaactaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCAATAGATCCAGTTATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACATATCTACAACGTAAt                <  2:309215‑M2/126‑1 (MQ=255)                                                                                                                               ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAGGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATg               <  1:215229‑M2/127‑1 (MQ=255)                                                                                                                                            caaCGTTTATGAAAATGAATAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGc  <  2:261214‑M2/140‑1 (MQ=255)                                                                                                                                               |                                                                                                                                            GTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGC  >  NC_000913/1209477‑1209758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.