New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12078054 (0.190)12 (0.640) 11/252 0.5 78.6% coding (305/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 = 1209602 3 (0.160)pseudogene (18/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

GGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGG  >  NC_000913/1207663‑1207937
                                                                                                                                              |                                                                                                                                    
cattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcctgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg                                                                                                                                      <  1:215229‑M1/16‑1 (MQ=255)
 attacgttgtagatatgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaataactggatctattgcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTAGTTTGGGAGAAGGa                                                                                                                                     <  2:309215‑M1/17‑1 (MQ=255)
    ccAGCCTGGAGAAGGGGCGGCACGACCAGTTATTTACCTCAGGTCGCGGGCTGCTGTTAAGCCGCAAGAATCCGTTTGTCGATATCAAATCGGATGGCACTTTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCa                                                                                                                                  >  2:334048/1‑143 (MQ=17)
     cAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctg                                                                                                                                 <  2:379460‑M1/143‑6 (MQ=255)
      ggcCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCACTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGCTATCTGTGTTTTGGTAGAAGGctctgc                                                                                                                                <  2:228294‑M1/142‑7 (MQ=255)
      aggctgtAGAGGGGGCGGCACGACCAGTTACTTACCGGACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgc                                                                                                                                <  2:345562‑M1/140‑7 (MQ=255)
       ttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaatcaggaatgatgccctttccttgttctttcttcattttcataaaatTTGGAATAGTAAAAGGAgcaaca                                                                                                                               <  1:225402‑M1/23‑3 (MQ=255)
          tGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGCAGAAGGgcctgcatta                                                                                                                            >  2:17620‑M1/1‑133 (MQ=255)
            gagagtgggCTGTACGACAAGTTACTTACCGCACTTCGCGCGCGGCTGTTAAGCCGCAAGAATCCGTTTGGCGATTTCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                                          <  2:177595/137‑1 (MQ=18)
              tctgtttgtgggtcatttggtgctatgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttagttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATg                                                                                                                        >  2:310821‑M1/114‑143 (MQ=255)
                  gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATACCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTGTGGGAGAAGGctatgcagtaccagttgg                                                                                                                    >  2:96110‑M1/1‑125 (MQ=255)
                   gtcggcacGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAATCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCACGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt                                                                                                                   <  1:7572‑M1/141‑20 (MQ=255)
                            atttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttgtttcttcattgtcataaacgGTGGTTTGGTAGAAGAAGCaaaacacaatgaagccacagcaaaa                                                                                                          <  1:141029‑M1/44‑11 (MQ=255)
                                gttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATtat                                                                                                      <  1:385635‑M1/48‑2 (MQ=255)
                                            acatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttattcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCATCTACGGCTCAATTAGGACGCAccggct                                                                                          <  2:259031‑M1/60‑3 (MQ=255)
                                                       tgctgTTAAGCCGCAAGAATCCGATTGGCGATGGCGAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaaca                                                                               >  2:335348‑M1/1‑88 (MQ=255)
                                                             tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgaattacctgatgatgtccagattccgtggccttcagacactacgcaaacagggtgg                                                                         >  1:21855‑M1/1‑82 (MQ=255)
                                                                aaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGATTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGCTATg                                                                      <  2:247070‑M1/80‑1 (MQ=255)
                                                                            ctctttgatttttCAAATCTTATGTCACTTTGCAAACGTCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt                                                          <  1:46796/131‑1 (MQ=255)
                                                                                      tatCACATCGGATGGCGCTCTGCATACGGCTCTCGAAAGCCTTGGTTTGGGAGAAGGctctgcattacccgttggtgtcccggttccgtggcctttagccactccgccaacaggctggctgaaatgcaatggtgccgcttttt                                                <  2:258163‑M1/143‑87 (MQ=255)
                                                                                         ggtgtgatgtgcttgttatttcttcatttgcataagcgTGGGTTTGGTAGAAGGAGCAAAACGCAATGCAGCAACGGCTATATTAGGACGGATCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGTGCAATCAGTaa                                             >  2:245088‑M1/39‑143 (MQ=255)
                                                                                                      tgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgggg                                <  2:42733‑M1/118‑1 (MQ=255)
                                                                                                            cAAACGGCTCTCGAAAACCTTGTTTTGGGAGAAGGctctgcattacctgtttttgtcccgtttccttggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaact                          <  1:17620‑M1/143‑109 (MQ=255)
                                                                                                               tcgtctctcgaaAACCTTGGTTCGGGAGAAGGctctgcattccctgttggtgtcccggttccgtggccttccgccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggc                       <  2:209185‑M1/139‑112 (MQ=255)
                                                                                                                tcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc                      <  2:83720‑M1/128‑1 (MQ=255)
                                                                                                                  gCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaa                    >  1:85245‑M1/1‑29 (MQ=255)
                                                                                                                       cataaaCCTTGGTTTGGGTGAAGGAGCAATACTCATTGTAGCAACGGCTATATTATGACGCACCGGTTTCATAGCTATACAGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAg               <  1:105805/140‑1 (MQ=255)
                                                                                                                            acgTTGGTGTGGCAGAAGGAGCAAAACTTGCTGCAGCAACGGCGACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAagcagct          >  2:136559‑M1/4‑140 (MQ=255)
                                                                                                                              gTTGGTTTTCAAGAAGAAGCAAAACTCAATGCAGTATCTGCTACATTAGGACGCACCGGTTTCATAGCTATAACGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc        >  1:123485‑M1/2‑143 (MQ=255)
                                                                                                                              gTTGGTTCGGGAGACGGAGCTAAACTCAATGCAGCACCGGCTACATTAGGACGCGCCGGTTTCATAGCTATACCGGTTATTATTTGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGc        >  2:20293‑M1/2‑143 (MQ=255)
                                                                                                                                    ttGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtggcacataaacagctaaagaataaccggaactggcaaaggctaatccgacacataa  >  1:115966‑M1/1‑11 (MQ=255)
                                                                                                                                              |                                                                                                                                    
GGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGG  >  NC_000913/1207663‑1207937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.