New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12078054 (0.190)12 (0.640) 11/252 0.5 78.6% coding (305/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 = 1209602 3 (0.160)pseudogene (18/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

TTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG  >  NC_000913/1209471‑1209740
                                                                                                                                   |                                                                                                                                          
ttatgtGTCGGATTAGCCTTTGCCAGTTCCGGTTATTCTTTAGCTGTTTATGTGCCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaa                                                                                                                                 >  1:115966‑M2/1‑132 (MQ=255)
       tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACg                                                                                                                          >  1:261214/1‑143 (MQ=255)
       tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGACCGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCGCCCAAACCAACg                                                                                                                          >  1:339505/1‑143 (MQ=255)
                  tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagc                                                                                                               >  1:85245‑M2/1‑114 (MQ=255)
                     gCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCGGAAGGCCACGGAACCGGGACACCAACAGGGAATGCAGAGccttctcccgaaccaaggttttcgagagacga                                                                                                            <  2:209185‑M2/143‑33 (MQ=255)
                        aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCAAGGAAACGGGACAAAAACAGGTAATGCAGAGccttctcccaaaacaaggttttcgagagccgtttg                                                                                                         <  1:17620‑M2/143‑36 (MQ=255)
                                              aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTAAAGGCCACGGAACCGGGACACCAACGGGTAATGCAGAGccttctcccaaaccaaggctttcgagagccgtatgcagagcgccatccgatgtgata                                                                                   <  2:258163‑M2/143‑58 (MQ=255)
                                                                       ccacccTGTTTGCGTAGTGTCTGAAGGCCACGGAATCTGGACATCATCAGGTAATTCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggctta                                                          >  1:21855‑M2/1‑61 (MQ=255)
                                                                             tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattcgccatcgccaatcggattcttgcggcttaacagca                                                    >  2:335348‑M2/1‑55 (MQ=255)
                                                                                    gggatGGCTGAGGGGTACGGAGCCGGGACACCAACAGGTAATGCAGAGCCTTGTCCCAAACCAACGTTTGCGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGGTTTTACCTGGGGGATTTAACATGCTTATTGGCt                                             <  2:91828/139‑1 (MQ=255)
                                                                                                                 acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgtgagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggattaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgac                <  1:7572‑M2/143‑125 (MQ=255)
                                                                                                                  ccAACTGGTACTGCATAGccttctcccacaccaaggttttcgagagccgtttgcacagtgccatccgatttggtatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccc               >  2:96110‑M2/1‑18 (MQ=255)
                                                                                                                          tAATGCAGGCccttctgccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcca       >  2:17620‑M2/1‑10 (MQ=255)
                                                                                                                              gCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtccggtaagtaactggtcgtgccgccccctctacagcct   <  2:345562‑M2/143‑138 (MQ=255)
                                                                                                                              gCAGAGccttctaccaaaacacagatagcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagtgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggcc   <  2:228294‑M2/143‑138 (MQ=255)
                                                                                                                               cAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctg  <  2:379460‑M2/143‑139 (MQ=255)
                                                                                                                                   |                                                                                                                                          
TTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACG  >  NC_000913/1209471‑1209740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.