New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2434254	35 (0.830)	3 (0.070)	3/274	6.3	7.9%	coding (486/660 nt)	dedA	DedA family inner membrane protein
	?	NC_000913	= 2434267	36 (0.890)					coding (473/660 nt)	dedA	DedA family inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTATTTCGATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGT  >  NC_000913/2434118‑2434396                                                                                                                                         |                                                                                                                                                cgagttccttGACGCCCGGCAAGACAGAACCCCCAATAGTCCCGACGATCAGCAGCTTACGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACg                                                                                                                                           <  1:426469/134‑1 (MQ=255)                             aaCCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACa                                                                                                              >  1:656672/1‑143 (MQ=255)                             aaCCACAATAATCCCGACGATCAGCAGCTTAAGGATATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCAGCGTAGGCAAAAAGCAGTACCCACAACCGTCCGCCTATCACGTTATAAG‑CGGCAGAATGACgagaccaca                                                                                                              >  1:263842/1‑135 (MQ=255)                                              cgaTCAGCAGCCTAAGGGTATCCACAACCTGCCCGACTGTGCCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTGCCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGca                                                                                             <  2:23874/143‑1 (MQ=255)                                                       gcTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGc                                                                                              >  2:503917/1‑133 (MQ=255)                                                       gcTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGc                                                                                              <  1:503917/133‑1 (MQ=255)                                                        cTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGTCTGGGTGGGTAAAAACCAGTATGTCGCAGACCCCACCCATCACGTTATAAG‑CGGCGCAATGACGGTACGACATGTGGCCCATTCCCGCCACAAACgggg                                                                                   >  2:730333/1‑143 (MQ=255)                                                        cTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACgggg                                                                                   >  2:47912/1‑143 (MQ=255)                                                          tAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCg                                                                                 >  2:589250/1‑143 (MQ=255)                                                           aaGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAACGCAGTACCCACAACAGTGCGCCGCTCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGCCCCATGCACGCAACAAACGGGGCGa                                                                                >  1:547106/1‑143 (MQ=255)                                                            aGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGaa                                                                               <  1:67429/143‑1 (MQ=255)                                                                 gtgcttagcgaTCTGGATGTTACCGCACAAATAGCCTCCGTAGGTAAAAAGCAGTACCCGCAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAACGACGGTACGACAGGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTc                                                                          <  1:319782/133‑1 (MQ=255)                                                                   attacaCCATCGGGATTGTACCGAAGCAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGAGCACGTTATAAG‑CGGCGAAATGACGGTACCACATGTGGCCCATTACCGCAACAAACGGGGCGAACGTACTg                                                                        >  1:173177/6‑143 (MQ=255)                                                                           aTCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCgg                                                                >  1:291049/1‑143 (MQ=255)                                                                            tCGGGATTGTACCGAAGAAATAGCCTGCGTAGGAAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAAGGACGGTACGACAGGTGACCCATACCCGCAACAGAGGGGGCGAACGTTCTGAGGagaggc                                                               >  1:711891/1‑138 (MQ=255)                                                                             cGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGca                                                              <  2:156631/143‑1 (MQ=255)                                                                                       ccGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGc                                                    <  2:115594/143‑1 (MQ=255)                                                                                        cGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACCACCCGGGCTACGGTTCTGACGATCGGCACAAAACGGGCg                                                   >  2:567839/1‑143 (MQ=255)                                                                                             aaaTAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCGCAAAACGAGCGAGaat                                              >  1:692588/1‑143 (MQ=255)                                                                                                 aGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCCCAAGACGGGCGAGAATAATc                                          >  2:131454/1‑143 (MQ=255)                                                                                                  gCCTGCGTAGGTAGAAAGCAGTACCCACGACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAACCg                                         <  1:396269/143‑1 (MQ=255)                                                                                                     tGCGTAGGTAAAACGCAGTACCCACAACAGGGCGCCGATCACGTTATACG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGttt                                      <  2:299119/143‑1 (MQ=255)                                                                                                      gCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCCCGCCATAT‑ACGGTACGGCGGGCGGCCCATTCCCGCAACAAACAGGGCGAACGCTCTGACGATCGGCACACAACGGGCGAGCATAATCGtttt                                     >  1:713867/1‑143 (MQ=255)                                                                                                          aGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGGTCGGCGCAAAAACCGCGACAATACTCGTTTTgccg                                 >  2:691267/1‑143 (MQ=255)                                                                                                           tgtgtaaaGCTGTTCACACAACAGTGCGCGGGTAACTGTATAAG‑AGGCGAAGTGACGGTACGTCATGTGCCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTgccgc                                <  1:285319/138‑1 (MQ=255)                                                                                                             tAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGACGAAATGACGGTACGACATGGGGCCCATTACCGCAACAAACGGGGCGAACGACCTGACGATCGGCACAAAACGGGCGAGAGTAATCGTTTTgccgccg                              >  1:553875/1‑142 (MQ=255)                                                                                                             tAAAAAGCAGTACCCACAAAAGTGCGCCGATCACGGTATAAG‑CGGCGCAATCACGGTACGACATGTGGCCCACACCCGCAACAAACGGGGCGAACGTTCTGACGAGCGGCACAGAACGAGCGAGaataacagctctgcagcaa                              >  1:124891/1‑129 (MQ=255)                                                                                                                  aGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGttt                         <  2:466225/143‑1 (MQ=255)                                                                                                                          ccACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGACCGGTCTGACGATCGGCACAAAACGGGCGAGAATAATGGTTTTGCCGCGATGTGGCTCATaag                 >  2:119700/1‑142 (MQ=255)                                                                                                                           cacaACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATaaaa                <  2:383284/143‑1 (MQ=255)                                                                                                                               acaGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGa            <  1:47912/143‑1 (MQ=255)                                                                                                                                  gTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATgg         <  2:668901/143‑1 (MQ=255)                                                                                                                                   tGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGAGCGGGACAAAACGGGCGAGAATAATCGTTTTGCCGCCGTGTTTCTCATAAAACTGATggg        >  1:426418/1‑143 (MQ=255)                                                                                                                                     cgcCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGtt      <  1:28510/143‑1 (MQ=255)                                                                                                                                         gATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAACCCGGGCGCGAATAATCGGTTTGCCGCCATGTTTCTCATAAAACTGATGGGTATTGt  >  2:4051/1‑143 (MQ=255)                                                                                                                                         |                                                                                                                                                TTATTTCGATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAG‑CGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGT  >  NC_000913/2434118‑2434396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.