New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 243425435 (0.830)3 (0.070) 3/274 6.3 7.9% coding (486/660 nt) dedA DedA family inner membrane protein
?NC_000913 = 2434267 36 (0.890)coding (473/660 nt) dedA DedA family inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCGAGA  >  NC_000913/2434146‑2434401
                                                                                                                         |                                                                                                                                       
aaCCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACa                                                                                                                   >  1:656672/1‑143 (MQ=255)
aaCCACAATAATCCCGACGATCAGCAGCTTAAGGATATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCAGCGTAGGCAAAAAGCAGTACCCACAACCGTCCGCCTATCACGTTATAAGCGGCAGAATGACgagaccaca                                                                                                                   >  1:263842/1‑135 (MQ=255)
                 cgaTCAGCAGCCTAAGGGTATCCACAACCTGCCCGACTGTGCCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTGCCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGca                                                                                                  <  2:23874/143‑1 (MQ=255)
                          gcTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGc                                                                                                   >  2:503917/1‑133 (MQ=255)
                          gcTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGc                                                                                                   <  1:503917/133‑1 (MQ=255)
                           cTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGTCTGGGTGGGTAAAAACCAGTATGTCGCAGACCCCACCCATCACGTTATAAGCGGCGCAATGACGGTACGACATGTGGCCCATTCCCGCCACAAACgggg                                                                                        >  2:730333/1‑143 (MQ=255)
                           cTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACgggg                                                                                        >  2:47912/1‑143 (MQ=255)
                             tAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCg                                                                                      >  2:589250/1‑143 (MQ=255)
                              aaGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAACGCAGTACCCACAACAGTGCGCCGCTCACGTTATAAGCGGCGAAATGACGGTACGACATGTGCCCCATGCACGCAACAAACGGGGCGa                                                                                     >  1:547106/1‑143 (MQ=255)
                               aGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGaa                                                                                    <  1:67429/143‑1 (MQ=255)
                                    gtgcttagcgaTCTGGATGTTACCGCACAAATAGCCTCCGTAGGTAAAAAGCAGTACCCGCAACAGTGCGCCGATCACGTTATAAGCGGCGAAACGACGGTACGACAGGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTc                                                                               <  1:319782/133‑1 (MQ=255)
                                      attacaCCATCGGGATTGTACCGAAGCAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGAGCACGTTATAAGCGGCGAAATGACGGTACCACATGTGGCCCATTACCGCAACAAACGGGGCGAACGTACTg                                                                             >  1:173177/6‑143 (MQ=255)
                                              aTCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCgg                                                                     >  1:291049/1‑143 (MQ=255)
                                               tCGGGATTGTACCGAAGAAATAGCCTGCGTAGGAAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAAGGACGGTACGACAGGTGACCCATACCCGCAACAGAGGGGGCGAACGTTCTGAGGagaggc                                                                    >  1:711891/1‑138 (MQ=255)
                                                cGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGca                                                                   <  2:156631/143‑1 (MQ=255)
                                                          ccGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGc                                                         <  2:115594/143‑1 (MQ=255)
                                                           cGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACCACCCGGGCTACGGTTCTGACGATCGGCACAAAACGGGCg                                                        >  2:567839/1‑143 (MQ=255)
                                                                aaaTAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCGCAAAACGAGCGAGaat                                                   >  1:692588/1‑143 (MQ=255)
                                                                    aGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCCCAAGACGGGCGAGAATAATc                                               >  2:131454/1‑143 (MQ=255)
                                                                     gCCTGCGTAGGTAGAAAGCAGTACCCACGACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAACCg                                              <  1:396269/143‑1 (MQ=255)
                                                                        tGCGTAGGTAAAACGCAGTACCCACAACAGGGCGCCGATCACGTTATACGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGttt                                           <  2:299119/143‑1 (MQ=255)
                                                                         gCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCCCGCCATATACGGTACGGCGGGCGGCCCATTCCCGCAACAAACAGGGCGAACGCTCTGACGATCGGCACACAACGGGCGAGCATAATCGtttt                                          >  1:713867/1‑143 (MQ=255)
                                                                             aGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGGTCGGCGCAAAAACCGCGACAATACTCGTTTTgccg                                      >  2:691267/1‑143 (MQ=255)
                                                                              tgtgtaaaGCTGTTCACACAACAGTGCGCGGGTAACTGTATAAGAGGCGAAGTGACGGTACGTCATGTGCCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTgccgc                                     <  1:285319/138‑1 (MQ=255)
                                                                                tAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGACGAAATGACGGTACGACATGGGGCCCATTACCGCAACAAACGGGGCGAACGACCTGACGATCGGCACAAAACGGGCGAGAGTAATCGTTTTgccgccg                                   >  1:553875/1‑142 (MQ=255)
                                                                                tAAAAAGCAGTACCCACAAAAGTGCGCCGATCACGGTATAAGCGGCGCAATCACGGTACGACATGTGGCCCACACCCGCAACAAACGGGGCGAACGTTCTGACGAGCGGCACAGAACGAGCGAGaataacagctctgcagcaa                                   >  1:124891/1‑129 (MQ=255)
                                                                                     aGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGttt                              <  2:466225/143‑1 (MQ=255)
                                                                                             ccACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGACCGGTCTGACGATCGGCACAAAACGGGCGAGAATAATGGTTTTGCCGCGATGTGGCTCATaag                      >  2:119700/1‑142 (MQ=255)
                                                                                              cacaACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATaaaa                     <  2:383284/143‑1 (MQ=255)
                                                                                                  acaGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGa                 <  1:47912/143‑1 (MQ=255)
                                                                                                     gTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATgg              <  2:668901/143‑1 (MQ=255)
                                                                                                      tGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGAGCGGGACAAAACGGGCGAGAATAATCGTTTTGCCGCCGTGTTTCTCATAAAACTGATggg             >  1:426418/1‑143 (MQ=255)
                                                                                                        cgcCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGtt           <  1:28510/143‑1 (MQ=255)
                                                                                                            gATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAACCCGGGCGCGAATAATCGGTTTGCCGCCATGTTTCTCATAAAACTGATGGGTATTGt       >  2:4051/1‑143 (MQ=255)
                                                                                                             agcACGTTAGAAGCGGCGAAATGACGGTACGACATGTGGCCCATGCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTc      <  1:730333/141‑1 (MQ=255)
                                                                                                                 cGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCgaga  >  2:162484/1‑143 (MQ=255)
                                                                                                                         |                                                                                                                                       
AACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCGAGA  >  NC_000913/2434146‑2434401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.