| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,815,858 | Δ82 bp | [rph]–[rph] | [rph], [rph] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3815858 | 3815939 | 82 | 34 [0] | [0] 34 | [rph]–[rph] | [rph], [rph] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3815857 | 0 (0.000) | 34 (0.870) | 32/264 | 0.2 | 100% | pseudogene (24/48 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH |
| ? | NC_000913 | 3815940 = | 0 (0.000) | pseudogene (609/669 nt) | rph | ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH | |||||
GCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCA > NC_000913/3815731‑3815989 | gcgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGCCGCCTCAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttca > 2:724207‑M1/1‑127 (MQ=255) tttcAATAACCCGGCGCTGATATGGTTTCATGCCTTCGCTCCGCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatg < 2:643036‑M1/142‑23 (MQ=255) ttCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCATGATCTTACTTTTGTAGAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgc > 2:124354‑M1/1‑120 (MQ=255) tCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGCCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatcatgcg > 2:493297‑M1/1‑119 (MQ=255) aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccc < 1:264459‑M1/143‑28 (MQ=255) aaaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctggacttcagtggtgcccccgt > 2:391160‑M1/1‑114 (MQ=255) tCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc < 2:590644‑M1/143‑50 (MQ=255) gCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgaagttctacttttggcccgtcttcggtcatcactacgttcatgt > 2:495704‑M1/1‑90 (MQ=255) ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAATGCTACTCATCAGTCGACTTAAAAATCAGTTTGCCAGCGCCGCCTACTACcgtccccggcacttcaatgatgcgcccgccttcggtcatcactacgttcatgtcgg > 1:484870‑M1/1‑87 (MQ=255) tcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAATTTGCCACCGCCGCCTTCTGCcgtcccctgcacttccatgatgcgcccgtcttcggccatccctacgttcacgccggtgcctgcg > 1:234165‑M1/1‑79 (MQ=255) cATCTTACTGTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcgg < 1:395361‑M1/143‑66 (MQ=255) aCTTTTCTACAGACAAAAAAAAGGCGACGCATCAGTCGCCTTAAAACTCATTTTGCCTGCGGCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagt < 1:352320‑M1/143‑72 (MQ=255) cttatgaacagagaaAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttctatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtc < 2:232792‑M1/136‑73 (MQ=255) ttttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtct > 2:396083‑M1/1‑70 (MQ=255) ttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatggcggtctctgcggcagagtcttc > 2:220643‑M1/1‑68 (MQ=255) aCAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacg > 2:417489‑M1/1‑64 (MQ=255) aGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTGGCCAGCACCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgta > 2:543122‑M1/1‑62 (MQ=255) gACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaccgtat > 2:226382‑M1/1‑61 (MQ=255) cagaaaaaggcGACTCATCAGTCGCCTTAAAAGTCAGTTTGCCAGCGCCGCCTTCTGCcttgccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcc < 1:634293‑M1/140‑86 (MQ=255) aaaaaTGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattcccga > 1:560173‑M1/1‑55 (MQ=255) aaaaGGCTACTCATCAGTAGCCTTAAAAAGCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagat < 2:492388‑M1/143‑90 (MQ=255) agaggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtccccttcacttctatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatc < 1:634682‑M1/141‑91 (MQ=255) aaaGGCGCCTCCTCAGTCGCCTTAAAGATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatggttcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatc < 1:101056‑M1/143‑91 (MQ=255) tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtatgtgcggctgagtcttcaacgtattccagatcgccaaccgt > 2:495683‑M1/1‑44 (MQ=255) atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgccaatcaacagacatcgctacgcccacctcgttctttgcggcagagtcttcaacgtattccagatcgcaaaccgctt > 2:200573‑M1/1‑42 (MQ=255) tcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCAGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttc < 2:54499‑M1/143‑103 (MQ=255) tCGCCTTAAACATCCGTTTGCCAGCGCCGCCTTCTGCcgccccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccg < 1:561969‑M1/143‑107 (MQ=255) aagaccagtttGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaat < 2:437739‑M1/138‑115 (MQ=255) aaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtcttcccgatcgcaaaccgctccgcccttcccaattc > 1:166095‑M1/1‑27 (MQ=255) ccaGTTCGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaacgatgcgcccgtcttcggtcatcactacgtccatgtcggtctctgcggcacagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccg < 1:462052‑M1/142‑119 (MQ=255) aGTTTGCCTGCGCCGCCTTCTGCcgtcccctgcacgtcaatggtgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgac < 1:727005‑M1/143‑121 (MQ=255) ccAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgggctctgcggcagagacttcaacgtattccagatcgcaaaccgcttcgccgttcacaaatacaaaaaacac > 2:366756‑M1/1‑17 (MQ=255) aGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgccagaaactg > 2:506522‑M1/1‑15 (MQ=255) ccgccTTCTGCcctcccctgcacttcattgatgcgcccgtcttcggtcatcactacgttcatgtcggtcgctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggc < 1:194192‑M1/143‑133 (MQ=255) | GCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCA > NC_000913/3815731‑3815989 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |